Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22590 67 / 3e-14 MADS AGL87 AGAMOUS-like 87 (.1.2) AT3G05860 64 / 1e-12 MADS MADS-box transcription factor family protein (.1.2.3) AT5G27960 64 / 2e-12 MADS AGL90 AGAMOUS-like 90 (.1) AT1G31630 64 / 3e-12 MADS AGL86 AGAMOUS-like 86 (.1) AT5G26650 62 / 9e-12 MADS AGL36 AGAMOUS-like 36 (.1) AT1G65300 59 / 1e-10 MADS AGL38, PHE2 PHERES2, AGAMOUS-like 38 (.1) AT5G26580 59 / 2e-10 MADS AGL34 AGAMOUS-like-34 (.1) AT5G48670 58 / 3e-10 MADS FEM111, AGL80 AGAMOUS-like 80 (.1) AT1G65330 57 / 6e-10 MADS AGL37, PHE1 PHERES1, AGAMOUS-like 37, MADS-box transcription factor family protein (.1) AT1G31640 54 / 1e-08 MADS AGL92 AGAMOUS-like 92 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000974 [exp] 229 / 9e-78 AT5G26650 93 / 3e-24 AGAMOUS-like 36 (.1) Lus10023293 [exp] 73 / 7e-17 AT1G22590 48 / 2e-07 AGAMOUS-like 87 (.1.2) Lus10014883 [exp] 68 / 5e-14 AT5G48670 114 / 1e-29 AGAMOUS-like 80 (.1) Lus10023294 [exp] 65 / 7e-14 AT1G22590 52 / 2e-09 AGAMOUS-like 87 (.1.2) Lus10022316 [exp] 64 / 2e-12 AT5G48670 131 / 2e-36 AGAMOUS-like 80 (.1) Lus10022325 [exp] 55 / 2e-09 AT1G65300 113 / 1e-30 PHERES2, AGAMOUS-like 38 (.1) Lus10014578 [exp] 52 / 4e-08 AT5G48670 182 / 5e-56 AGAMOUS-like 80 (.1) Lus10019819 [exp] 51 / 8e-08 AT5G55690 83 / 7e-18 MADS-box transcription factor family protein (.1) Lus10012545 [exp] 48 / 8e-08 AT3G61120 92 / 1e-24 AGAMOUS-like 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G107600 [exp] 89 / 1e-22 AT1G22590 117 / 9e-34 AGAMOUS-like 87 (.1.2) Potri.005G002400 [exp] 70 / 1e-14 AT5G48670 222 / 4e-71 AGAMOUS-like 80 (.1) Potri.012G109900 [exp] 62 / 1e-11 AT5G55690 112 / 2e-28 MADS-box transcription factor family protein (.1) Potri.002G255700 [exp] 62 / 2e-11 AT5G55690 112 / 3e-28 MADS-box transcription factor family protein (.1) Potri.001G329800 [exp] 58 / 3e-10 AT5G55690 64 / 2e-11 MADS-box transcription factor family protein (.1) Potri.006G201700 [exp] 57 / 1e-09 AT5G48670 120 / 2e-30 AGAMOUS-like 80 (.1) Potri.013G001700 [exp] 56 / 1e-09 AT5G48670 203 / 3e-64 AGAMOUS-like 80 (.1) Potri.001G214900 [exp] 55 / 3e-09 AT5G55690 94 / 4e-22 MADS-box transcription factor family protein (.1) Potri.013G018100 [exp] 54 / 7e-09 AT5G48670 187 / 1e-58 AGAMOUS-like 80 (.1) Potri.004G131100 [exp] 51 / 3e-08 AT2G34440 137 / 2e-41 AGAMOUS-like 29 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10028653 pacid=23164529 polypeptide=Lus10028653 locus=Lus10028653.g ID=Lus10028653.BGIv1.0 annot-version=v1.0 ATGGGGAGAAGCAAGGTGAGACATGAGTTTATTGCGAAAGAAGCTGCTAGAAAAATAACTTTCAGAAAGAGGACAACTGGATTGTGGAATAAACTGAGGG AGATCTCAACTCTTTGCGGAGTTGCAGCTTGTGGAGTCATCTTCTCCAATTTCACCGGAAAAGGTAAAGAAAGTCAACCAAAAGTAGAGGCATGGCCATC TGGTGTAGAAGCCGTTGAGATGCTAAAAAGGATGAAAAAACTGCCTGAGAAGAAACAAAAGAAGTACAAGCTAAACCACGACTCGCTATTGAATGCGAGA GTGGAGAAGTTGGAGGAGAAGCTGAAGAATGAGATCGAGAATAACCAGTGGCTCGAGATAGAGTGGCTACTCCGGCATGAAGATGTTCATATGGAGGAAG CGTTGAGTGGCGGCTACATCAATCTGAATGACCCCGCGAAATTGAAGAGCATGGGCGAGAAGGTGGAAGAGCTGATTAAACAGGTTGATGAGCAGATCGA GGATCTCGAGAACGAGTGA
AA sequence Show only first row Show all	>Lus10028653 pacid=23164529 polypeptide=Lus10028653 locus=Lus10028653.g ID=Lus10028653.BGIv1.0 annot-version=v1.0 MGRSKVRHEFIAKEAARKITFRKRTTGLWNKLREISTLCGVAACGVIFSNFTGKGKESQPKVEAWPSGVEAVEMLKRMKKLPEKKQKKYKLNHDSLLNAR VEKLEEKLKNEIENNQWLEIEWLLRHEDVHMEEALSGGYINLNDPAKLKSMGEKVEELIKQVDEQIEDLENE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Lus10028653 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026237 [exp]	2.8	0.8541
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036078 [exp]	3.5	0.8443
AT5G62420			NAD(P)-linked oxidoreductase s...		Lus10031739 [exp]	3.5	0.8378
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10042522 [exp]	3.5	0.8074
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10025922 [exp]	5.3	0.8285
AT5G25120		CYP71B11	"ytochrome p450, family 71, su...		Lus10013194 [exp]	7.1	0.8130
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10027397 [exp]	8.1	0.7850
AT5G53040		GRD, RKD4	RWP-RK domain-containing 4, GR...		Lus10005921 [exp]	8.5	0.7884
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10014605 [exp]	9.2	0.7558
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10001110 [exp]	11.8	0.7854

Compare expression of checked genes

Lus10028653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.