Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64940 554 / 0 CYP89A6 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) AT2G12190 541 / 0 CYP89A4 Cytochrome P450 superfamily protein (.1) AT1G64950 534 / 0 CYP89A5 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) AT1G64930 527 / 0 CYP89A7 "cytochrome P450, family 87, subfamily A, polypeptide 7", cytochrome P450, family 87, subfamily A, polypeptide 7 (.1) AT1G64900 493 / 3e-171 CYP89A2 "cytochrome P450, family 89, subfamily A, polypeptide 2", cytochrome P450, family 89, subfamily A, polypeptide 2 (.1) AT5G61320 474 / 4e-164 CYP89A3 "cytochrome P450, family 89, subfamily A, polypeptide 3", cytochrome P450, family 89, subfamily A, polypeptide 3 (.1) AT3G03470 470 / 3e-162 CYP89A9 "cytochrome P450, family 87, subfamily A, polypeptide 9", cytochrome P450, family 87, subfamily A, polypeptide 9 (.1) AT1G11600 333 / 6e-109 CYP77B1 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) AT5G04630 320 / 9e-104 CYP77A9 "cytochrome P450, family 77, subfamily A, polypeptide 9", cytochrome P450, family 77, subfamily A, polypeptide 9 (.1) AT3G10570 317 / 1e-102 CYP77A6 "cytochrome P450, family 77, subfamily A, polypeptide 6", cytochrome P450, family 77, subfamily A, polypeptide 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020353 [exp] 744 / 0 AT1G64940 572 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10020359 [exp] 706 / 0 AT1G64940 550 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10020360 [exp] 687 / 0 AT1G64940 613 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10010229 [exp] 595 / 0 AT1G64940 574 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10002138 [exp] 497 / 2e-172 AT1G64940 586 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10013067 [exp] 470 / 2e-162 AT1G64940 472 / 4e-163 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10009536 [exp] 354 / 2e-120 AT1G64940 290 / 1e-95 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10034156 [exp] 340 / 1e-111 AT5G04660 679 / 0.0 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) Lus10007659 [exp] 331 / 6e-108 AT1G11600 639 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G088086 [exp] 606 / 0 AT1G64950 636 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G087950 [exp] 603 / 0 AT1G64950 642 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G088154 [exp] 602 / 0 AT1G64950 639 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.005G079600 [exp] 593 / 0 AT1G64940 575 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.007G088018 [exp] 592 / 0 AT1G64940 605 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.013G076600 [exp] 573 / 0 AT1G64940 578 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.013G076700 [exp] 567 / 0 AT1G64940 592 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.008G099100 [exp] 543 / 0 AT1G64940 540 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.001G330501 [exp] 522 / 0 AT1G64940 569 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.015G006100 [exp] 504 / 2e-175 AT1G64940 484 / 7e-168 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10028654 pacid=23164488 polypeptide=Lus10028654 locus=Lus10028654.g ID=Lus10028654.BGIv1.0 annot-version=v1.0 ATGGAGGATCACTGGTTCCTTATCGTAGTCTCCCTCTCAATTGCCTTCCTCCTCAAATCCTTTATTAACCTCTTCTCACCCTCCTCCGCCGGAAAATCAT CTCTTCCGCCTCGCCCCGCTGGGTTACCGCTCATCGGAAACCAGCTCCTACTCATCGGCACAGGACTTGAACCACTTCTTCGTTCCCTCCACGCCAAATA CGGCCCCGCTGTCACACTCCGCATCGGTCGCAAGCCCGCAATTTTCGTTGCAGACCGAGCCACCGCCCACCGCGCTTTGGTCCAGAACGGTGGCATGTTC GCTGATCGGCCTCTAGCTTCTATCGTGTCTCGAGTCACCAGCTCCAATCAGCACAACATCAGCGCCTCGTTCTATGGCCCGACATGGCGGCTACTGCGGC GAAACCTCACTGCCGAGATCCTCAACCCTTCCCGCATGAAAACCTACTCTCATGCGCGCATGTGGGTTCTAGATTCTCTCAGGAGCCGGATCACCGATTC TTCCATATCGGAACCGGTCCGGGTCCACAAACTGTTCCAGTATGCCATGTTCTGCTTGCTGGCATATATGTGCTATGGGGAAAAGCTGGAAGAGAAGCAG ATCATGGAGATTGAGCGAGTGGAGCGACAAATGCTTGTGAACGTGAGGCGATTCGCCATTCTCGATTTCGCTCCTTCGATTACGCGGATATTGATGAGGA AGCGGTGGTCGGAGCTTCTACGGATGAGGAAGGATCAGGAAGACGTACTGCTCCCACTAATTCGATCCAGAAAGTGCAAAATTGAAGAAGAAGATAGAGG AATCCTCTTCACGGCGTACGTCGACACACTCTTCGATCTGGAACTGCCAGTCGAGAAGCGGAAATTGACGGAGGCAGAGATGGTTAGCCTCTGTAACGAA TTTCTCAGCGCCGGTACGGACACCACCACCACTGCCCTTCAGTGGATCATGGCGAATTTAGTGAAATATCAGAACATACAAACGAGGCTATTCGAAGAAA TCAAATCCCTAATCGGCGAAACTAAGAAAACGGAAGTTGAAGAGGAAGATCTACGAAAGCTTCCGTACTTGAAGGCAGTGGTGTTGGAAGCGCTGCGCCG CCATCCACCGGCACATTTCCTGCTGCCGCACGCAGTGAAGTCAACGACGGAGCTCGGCGGAGGGTATTCGGTGCCAGAAGATGGGATTGTGAATTTCATG GTGGCGGAGATGGGAAGGGACCCGAAAGTGTGGGAGAATCCGATGTCGTTTAAGCCCGAGAGATTTTTGGGCGATATGATGCCATTTGATATAACGTCGG GGAAGGAAATCAAAATGATGCCGTTTGGTGCTGGGAGGAGAATGTGTCCTGCATATAGTATGGCTATTCTTCATTTGGAGTATTTTGTGGCGAATTTGGT TTGGAGTTTCGAGTGGAAGGCTATTGCTGATGAAGAAGTAGATCTGTCGGAAGTGGAAGAGTTTACGGTGGTGATGAAGAATCCTTTGGTGGCCCACGTC TCATCAAGATTCGGGGTGCTTTAA
AA sequence Show only first row Show all	>Lus10028654 pacid=23164488 polypeptide=Lus10028654 locus=Lus10028654.g ID=Lus10028654.BGIv1.0 annot-version=v1.0 MEDHWFLIVVSLSIAFLLKSFINLFSPSSAGKSSLPPRPAGLPLIGNQLLLIGTGLEPLLRSLHAKYGPAVTLRIGRKPAIFVADRATAHRALVQNGGMF ADRPLASIVSRVTSSNQHNISASFYGPTWRLLRRNLTAEILNPSRMKTYSHARMWVLDSLRSRITDSSISEPVRVHKLFQYAMFCLLAYMCYGEKLEEKQ IMEIERVERQMLVNVRRFAILDFAPSITRILMRKRWSELLRMRKDQEDVLLPLIRSRKCKIEEEDRGILFTAYVDTLFDLELPVEKRKLTEAEMVSLCNE FLSAGTDTTTTALQWIMANLVKYQNIQTRLFEEIKSLIGETKKTEVEEEDLRKLPYLKAVVLEALRRHPPAHFLLPHAVKSTTELGGGYSVPEDGIVNFM VAEMGRDPKVWENPMSFKPERFLGDMMPFDITSGKEIKMMPFGAGRRMCPAYSMAILHLEYFVANLVWSFEWKAIADEEVDLSEVEEFTVVMKNPLVAHV SSRFGVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10028654 [exp]	0	1
AT4G30400			RING/U-box superfamily protein...		Lus10015502 [exp]	46.9	0.6251
AT1G11340			S-locus lectin protein kinase ...		Lus10005136 [exp]	60.4	0.6034
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10002374 [exp]	67.3	0.6489
AT1G50460		ATHKL1, HKL1	hexokinase-like 1 (.1)		Lus10019038 [exp]	75.6	0.6510
AT2G38870			Serine protease inhibitor, pot...		Lus10024370 [exp]	82.6	0.6242
AT3G22540			Protein of unknown function (D...		Lus10006107 [exp]	82.8	0.6152
					Lus10013458 [exp]	114.6	0.6181
AT5G14230			unknown protein		Lus10041588 [exp]	190.7	0.5769

Compare expression of checked genes

Lus10028654 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.