Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77250 256 / 2e-78 RING/FYVE/PHD-type zinc finger family protein (.1) AT3G01460 69 / 8e-12 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1) AT5G24330 56 / 4e-08 SDG34, ATXR6 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) AT3G52100 51 / 2e-06 RING/FYVE/PHD-type zinc finger family protein (.1) AT5G09790 49 / 6e-06 PDE336, SDG15, ATXR5 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) AT3G08020 48 / 2e-05 PHD finger family protein (.1) AT5G44800 46 / 9e-05 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT4G14700 44 / 0.0003 ORC1, ATORC1A, ORC1A origin recognition complex 1 (.1) AT3G14740 43 / 0.0003 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT4G12620 42 / 0.0008 ORC1B, ATORC1B, UNE13 UNFERTILIZED EMBRYO SAC 13, origin of replication complex 1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000973 [exp] 884 / 0 AT1G77260 652 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10042764 [exp] 517 / 3e-179 AT1G77250 301 / 1e-95 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10029733 [exp] 515 / 3e-178 AT1G77250 313 / 5e-100 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10008796 [exp] 68 / 1e-11 AT3G01460 1574 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10030625 [exp] 64 / 3e-10 AT3G01460 706 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10030864 [exp] 61 / 2e-09 AT3G01460 511 / 2e-152 methyl-CPG-binding domain 9 (.1) Lus10008495 [exp] 52 / 1e-06 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10016404 [exp] 48 / 3e-05 AT3G08020 569 / 0.0 PHD finger family protein (.1) Lus10019715 [exp] 47 / 3e-05 AT3G08020 726 / 0.0 PHD finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G183700 [exp] 375 / 2e-123 AT1G77250 315 / 2e-100 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.002G076900 [exp] 357 / 1e-116 AT1G77250 332 / 3e-107 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.017G072460 [exp] 65 / 1e-10 AT3G01460 929 / 0.0 methyl-CPG-binding domain 9 (.1) Potri.015G009632 [exp] 54 / 2e-07 AT5G24330 483 / 1e-172 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.012G018300 [exp] 53 / 2e-07 AT5G24330 480 / 3e-171 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.001G358900 [exp] 53 / 6e-07 AT1G50620 314 / 8e-97 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.003G126600 [exp] 52 / 1e-06 AT1G63490 1013 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.005G058000 [exp] 50 / 2e-06 AT5G09790 481 / 2e-170 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) Potri.007G109900 [exp] 50 / 3e-06 AT5G09790 473 / 1e-167 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) Potri.009G059700 [exp] 48 / 2e-05 AT3G08020 748 / 0.0 PHD finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Lus10028655 pacid=23164538 polypeptide=Lus10028655 locus=Lus10028655.g ID=Lus10028655.BGIv1.0 annot-version=v1.0 ATGACGAGGAAATCAAAATGCAGTGATTGTTTCAACTGCTTGTGTGCCGAATCTTGTAGAATTTCGGGTTATTGTGATACCATTGAAGCTTTTCGTGCTA GTGATTTAGACTTTGGCTATGGAGACTGCTGGAATCAGAAAGTTCCATTCTTTAGATTCGAAGGGATGGGCGGTGGTGAAGAGAGATCGACTGGTGGCCA GTCGGATGTGGCTGGTAGAGGGAAATGCTGGAAGAGTGAGGTGGTGAATGGGTTCATTAATGATAATCGTGATGGGAGATTGTCGTCTAGGGAAGGGCTA CACACTTATAAGAGGAGGAAACGGATGGGATCTAGTTCAGAGAGGAAAGATCTTGGAGAAGGCAGTCGTTCTGGAGTAGCGGCTGGGAAATTCGCGCAGG AAGAGACTGTGAAGAAACCCCTGGACCATCCTGCCGGCAGCCAAACTGGTTTAACCGGTTCGAACGATGGTTCTCAAGGGCAGTGCAGAAATTATATCCT GGAGCAAATGTACCGGTCGTTAAGTGACGACAAAGGTGGTATACAGGATTGCATCAAAGATGTACTTGGCACATCATCATTAAAGGCTTCTCATGAGCGA AATCACCGTACTGTAACTGATACGTGCCGGCTTGTGCTCCGTGGCATGATATCATCCGAGTTTTTCACCTCACTATGCAGGCTACTATATGAAAATTTCC ATGAAAGCAGCACTGGTAACCTTTTCAGCCTAAGTGATATAAATAGAAGGATGATAGATGGAGATTATGAGCATCGACCCGGGTTTTTCTCTCAAGATAT CCAACAGTTCTGGGAAGAGTTTGAAGGGATCGGAACCGAACTGATTTTCCTCGCGAGGAGCCTCTCCGATGAATCAACCAAGTCCTTCGAGAAACAGTTG TCAACAACAGATCAAACAGAAGGCGCGTGCAGACACTGTCAGAAAAAAGCAGACAACGATAAAGATTGTCTAGTCTGCGATTGGTGCGAGGAAATGTACC ATATCTTGTGCATCGATCCCCCCCTCGAAGAAATTCCTCCGAAAAGTTGGTATTGCTCCGGTTGTTTAGCTGATGATGGAATCTGCACTCACGAACAATG TGTCGTCTGCGAGAGGCTCGATAATAATAATCAAGCTGCTCAATCTGCCGCCTGTGAATCCAGCGAGGAAACCTTGTCTGATTTACGAGAGCCACCGTGT CAGAGCACTGATGCTTCCTCGATTCATTGCAAGCTTTGTGGAAGCGATTTCGAGAGTGGAGTAAAAGTGAAGATCTGCGAAAACTCCGAATGCCCTAACA AGTATTACCACACGAGGTGTTTGACAGCGAAGCAGTTGAGCTGGCACGGTGGTCCCATGTGGTACTGCCCGTCTTGTCTCTGCCAAGGTTGCTTAACCGA TAAAGACGACCACGATATCGTTCTGTGTGATGGTTGTGATGATGGCTACCACATTTACTGCATGGAGCCGGCACGGAGTTCCATACCGACGGGGAGATGG TTTTGTAGGCAGTGTATGGTGAGACTGAAGAAAGTTCGAAGGGCTAGGGAGGCGTACGAGAAATCGGAGAGGAAAAACGAAGGGATCACTCTGTTGCTGA ATGCTTCTCTTATAGAAGATAAGTTTGCTGGGAAACAGAAGAAGCAGAGTTGA
AA sequence Show only first row Show all	>Lus10028655 pacid=23164538 polypeptide=Lus10028655 locus=Lus10028655.g ID=Lus10028655.BGIv1.0 annot-version=v1.0 MTRKSKCSDCFNCLCAESCRISGYCDTIEAFRASDLDFGYGDCWNQKVPFFRFEGMGGGEERSTGGQSDVAGRGKCWKSEVVNGFINDNRDGRLSSREGL HTYKRRKRMGSSSERKDLGEGSRSGVAAGKFAQEETVKKPLDHPAGSQTGLTGSNDGSQGQCRNYILEQMYRSLSDDKGGIQDCIKDVLGTSSLKASHER NHRTVTDTCRLVLRGMISSEFFTSLCRLLYENFHESSTGNLFSLSDINRRMIDGDYEHRPGFFSQDIQQFWEEFEGIGTELIFLARSLSDESTKSFEKQL STTDQTEGACRHCQKKADNDKDCLVCDWCEEMYHILCIDPPLEEIPPKSWYCSGCLADDGICTHEQCVVCERLDNNNQAAQSAACESSEETLSDLREPPC QSTDASSIHCKLCGSDFESGVKVKICENSECPNKYYHTRCLTAKQLSWHGGPMWYCPSCLCQGCLTDKDDHDIVLCDGCDDGYHIYCMEPARSSIPTGRW FCRQCMVRLKKVRRAREAYEKSERKNEGITLLLNASLIEDKFAGKQKKQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10028655 [exp]	0	1
AT5G14290			Mitochondrial ribosomal protei...		Lus10041583 [exp]	2.0	0.9145
AT4G14305			Peroxisomal membrane 22 kDa (M...		Lus10011798 [exp]	3.5	0.9127
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10009502 [exp]	7.2	0.8902
AT5G26800			unknown protein		Lus10031426 [exp]	7.3	0.8782
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10035972 [exp]	7.5	0.8834
AT3G10260			Reticulon family protein (.1.2...		Lus10029822 [exp]	12.5	0.9095
AT1G49180			protein kinase family protein ...		Lus10033518 [exp]	14.8	0.8936
AT2G43370			RNA-binding (RRM/RBD/RNP motif...		Lus10025557 [exp]	16.3	0.9038
AT5G56580		ANQ1, ATMKK6	ARABIDOPSIS THALIANA MAP KINAS...		Lus10034986 [exp]	16.9	0.8465
AT4G27870			Vacuolar iron transporter (VIT...		Lus10037315 [exp]	20.4	0.9010

Compare expression of checked genes

Lus10028655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.