Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77260 665 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 637 / 0 Putative methyltransferase family protein (.1) AT2G39750 623 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G23300 359 / 7e-116 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G14360 353 / 7e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G34300 357 / 2e-113 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G29470 348 / 6e-110 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G64030 346 / 1e-108 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G04430 339 / 3e-108 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G51070 343 / 8e-107 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000973 [exp] 905 / 0 AT1G77260 652 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10042762 [exp] 793 / 0 AT1G77260 741 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10029731 [exp] 789 / 0 AT1G77260 732 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10030155 [exp] 624 / 0 AT2G39750 1049 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10001013 [exp] 617 / 0 AT2G39750 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004702 [exp] 616 / 0 AT2G39750 1021 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10040268 [exp] 582 / 0 AT2G39750 967 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10003656 [exp] 343 / 9e-110 AT5G14430 872 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10022291 [exp] 343 / 1e-109 AT5G14430 881 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G077100 [exp] 708 / 0 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G059500 [exp] 627 / 0 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G199300 [exp] 593 / 0 AT2G39750 998 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G075800 [exp] 352 / 1e-110 AT1G29470 1048 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G184500 [exp] 349 / 7e-110 AT1G29470 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.010G185000 [exp] 341 / 7e-109 AT2G40280 810 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G036800 [exp] 333 / 6e-106 AT1G04430 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G118100 [exp] 340 / 3e-105 AT3G51070 990 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G342300 [exp] 331 / 4e-105 AT5G14430 893 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G226000 [exp] 331 / 4e-105 AT1G04430 939 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10028656 pacid=23164642 polypeptide=Lus10028656 locus=Lus10028656.g ID=Lus10028656.BGIv1.0 annot-version=v1.0 ATGAAGCCCCCCTCCGCGGCCGCCGTAGTCGACATAGCCAAAACCCCCAACCTCGTCAAGCTCGCCGCCATCGCCCTCCTCTCCCTCTCCGTCGCCCTTC TCTTCTACCACCACCACCCTTCCTTCCCTTCCTCCGCCTTCTCCTCCTTGCCATTCACCACCACCGCCAACTCCTCCTCCTCCGCCTCCGTAGCCGCCGA AGTCAATTCCACCTCCAACTCCAGCTCGATTGTAATCAAGCCGAAGAAGAAGAGGATTCTGCCTCTGTCGGTGGTGGTGATCACGGGGATAGTGGGCGAG AGCGGCGCGATGACCGACGACTTCGACGTCGGGGAGTTCGATTCCAGCGCGATGGAGGAGCTCAGGAGTTTCAGGGGAAGAAATGATGATCAGAAGAAGG AGGAGGAAGTTAAGAAGTACGAGAAGTTCAAGGCGTGTAATTACAACAAGATCGATCACATTCCTTGTTTGGAGAATTTCGAACGGAATTGTCCCAATTC GACGATGAATTGCGTTCTTCCTTGGCCTAAAGGTTACAAGAGTTCACTCCCCTGGCCTAGAAGCCGCGAGGAGGTGTGGCTTCGTAATGTACCTGATACA AGTCTGGTTCAGGACCAAGAGTATGCAATGTCAGTGAAAGATGATAAGATCATGATTCGAGATGGCGATGGTGTTGATAAATATCTGAACTTGATTTCAC AGATGGTTCCTGACATAGATTTTGGCCATAGAACACGAGTAGCCTTAGACATTGGTTCCGGGATCGGTAGCCTTGCAGTGTCGTTGTGTCAGCGCAATGT GACCACACTTTCGATCGGGACGAAGGATGCTCATAGGAATCAGATTCAGTTCGCGTTGGAGCGAGGCGTTCCAGCAATGGTGGCTGCATTTGGGACTTGG AGGCTGCCGATTGCAAGCCAAGCTTTTGACTTGATTCATAGCTCGAGATCAGGAATTGATTGGACTGTTGATAATGGCGTTTTGCTTTTGGAGGTGAACA GAATGCTGAGAGCCGGACGATATTTCGTGTGGGGGGTGCCACAAGTTGATAATCGTGATGTCAGTTTAGAGCATCAATGGAAAGAAATGGAAGATCTTAC TGGGCGCCTCTGCTGGAAACTTGTGAACAGGGAAGGTAATATTGCGATATGGCGTAAACCTCTGAACTCCAGCTGCTATCTTGGTCGTGGCAATGGAACA AAACCACTACTATGTAGTTCCAATGATGATCCGGACAATGTTTGGTACGCGAATATGACACCATGCATAACTCCGTTGCCAGAGGATGGATTCGGATCGA ATGTTACTATGTGGCCAGCACGACTTCACTATCCTCCTGATCGTCTCCAGAGTATTAAAATGGATGCATCCATATCCAGAAAGGAACTGTTGAAAGCAGA ATCAAGATACTGGAATGAAATTATAGGCAGTTACGTTAGAGCTTTCCACTGGAAAGAGAAGAACTTTCGGAATGTGATAGACATGAGGGCCGGTTTTGGA GGGTTTGCAGCAGCAATGCATGACTTAGAACTGGCTTCCTGGGTCTTGAATGTCGTTCCTGTCAATGGCTTCAACACCCTGCCGGTCATATACGACCGTG GACTCCTTGGAGTAATGCATGACTGGTGCGAGCCATTCGATACTTACCCCAGATCATACGACCTCGTGCATGCATCAGGTCTATTTTCCGACGAGAGGAA AAGGCAAAAGTGCAACTTCTCAACTATCTTGCTGGAGATGGACAGGATGCTAAGACCGGGAGGGACGGTCTACATTCGCGACAGCTTAGCAGTCACGGGA GAAATCCACGAGATAGGTACTGCATTGGGATGGGTCGTCATGGTTCACGACACTGGAGAAGGACCTCACGCGAGCTGGAAGTTCTTGGTCTGCGAGAAAC GTATACCGTGA
AA sequence Show only first row Show all	>Lus10028656 pacid=23164642 polypeptide=Lus10028656 locus=Lus10028656.g ID=Lus10028656.BGIv1.0 annot-version=v1.0 MKPPSAAAVVDIAKTPNLVKLAAIALLSLSVALLFYHHHPSFPSSAFSSLPFTTTANSSSSASVAAEVNSTSNSSSIVIKPKKKRILPLSVVVITGIVGE SGAMTDDFDVGEFDSSAMEELRSFRGRNDDQKKEEEVKKYEKFKACNYNKIDHIPCLENFERNCPNSTMNCVLPWPKGYKSSLPWPRSREEVWLRNVPDT SLVQDQEYAMSVKDDKIMIRDGDGVDKYLNLISQMVPDIDFGHRTRVALDIGSGIGSLAVSLCQRNVTTLSIGTKDAHRNQIQFALERGVPAMVAAFGTW RLPIASQAFDLIHSSRSGIDWTVDNGVLLLEVNRMLRAGRYFVWGVPQVDNRDVSLEHQWKEMEDLTGRLCWKLVNREGNIAIWRKPLNSSCYLGRGNGT KPLLCSSNDDPDNVWYANMTPCITPLPEDGFGSNVTMWPARLHYPPDRLQSIKMDASISRKELLKAESRYWNEIIGSYVRAFHWKEKNFRNVIDMRAGFG GFAAAMHDLELASWVLNVVPVNGFNTLPVIYDRGLLGVMHDWCEPFDTYPRSYDLVHASGLFSDERKRQKCNFSTILLEMDRMLRPGGTVYIRDSLAVTG EIHEIGTALGWVVMVHDTGEGPHASWKFLVCEKRIP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77260			S-adenosyl-L-methionine-depend...		Lus10028656 [exp]	0	1
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10029216 [exp]	8.1	0.7552
AT2G39780		RNS2	ribonuclease 2 (.1.2)		Lus10041084 [exp]	9.9	0.7063
AT5G20280		SPSA1, ATSPS1F	sucrose-phosphate synthase A1,...		Lus10038119 [exp]	10.8	0.7448
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10028039 [exp]	14.5	0.7121
AT2G30350			Excinuclease ABC, C subunit, N...		Lus10042228 [exp]	15.2	0.6641
AT5G13030			unknown protein		Lus10031224 [exp]	15.7	0.7089
AT1G71940			SNARE associated Golgi protein...		Lus10014818 [exp]	15.8	0.7344
AT5G11110		SPSA2, KNS2, AT...	sucrose-phosphate synthase A2,...		Lus10008056 [exp]	18.5	0.7220
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10037836 [exp]	20.2	0.7103
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10002346 [exp]	22.8	0.6994

Compare expression of checked genes

Lus10028656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.