Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21550 121 / 3e-35 Calcium-binding EF-hand family protein (.1) AT5G44460 95 / 1e-24 CML43 calmodulin like 43 (.1) AT4G20780 95 / 1e-24 CML42 calmodulin like 42 (.1) AT5G37770 86 / 1e-21 CML24, TCH2 TOUCH 2, CALMODULIN-LIKE 24, EF hand calcium-binding protein family (.1) AT1G66400 86 / 2e-21 CML23 calmodulin like 23 (.1) AT4G12860 78 / 3e-18 UNE14 unfertilized embryo sac 14, EF hand calcium-binding protein family (.1) AT2G43290 77 / 1e-17 MSS3 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) AT1G05990 76 / 2e-17 RHS1 ,RHS2 ROOT HAIR SPECIFIC 1, EF hand calcium-binding protein family (.1) AT1G73630 75 / 3e-17 EF hand calcium-binding protein family (.1) AT3G59440 74 / 2e-16 Calcium-binding EF-hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000972 [exp] 281 / 7e-98 AT1G21550 128 / 3e-38 Calcium-binding EF-hand family protein (.1) Lus10042761 [exp] 120 / 7e-35 AT1G21550 70 / 7e-16 Calcium-binding EF-hand family protein (.1) Lus10029730 [exp] 97 / 2e-26 AT1G21550 68 / 8e-16 Calcium-binding EF-hand family protein (.1) Lus10042762 [exp] 100 / 1e-24 AT1G77260 741 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10019863 [exp] 91 / 7e-23 AT2G15680 233 / 9e-79 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Lus10014050 [exp] 89 / 3e-22 AT2G15680 239 / 4e-81 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Lus10021134 [exp] 86 / 5e-21 AT4G20780 236 / 8e-80 calmodulin like 42 (.1) Lus10017174 [exp] 84 / 4e-20 AT4G20780 234 / 4e-79 calmodulin like 42 (.1) Lus10003239 [exp] 82 / 1e-19 AT4G20780 249 / 5e-85 calmodulin like 42 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G183300 [exp] 161 / 7e-51 AT1G21550 136 / 1e-41 Calcium-binding EF-hand family protein (.1) Potri.002G077300 [exp] 154 / 3e-48 AT1G21550 123 / 3e-36 Calcium-binding EF-hand family protein (.1) Potri.017G029700 [exp] 87 / 3e-21 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.007G128600 [exp] 86 / 1e-20 AT2G43290 218 / 3e-72 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Potri.006G112500 [exp] 85 / 1e-20 AT4G20780 238 / 2e-80 calmodulin like 42 (.1) Potri.016G142000 [exp] 84 / 3e-20 AT4G20780 197 / 3e-64 calmodulin like 42 (.1) Potri.004G089400 [exp] 82 / 6e-20 AT1G66400 157 / 7e-50 calmodulin like 23 (.1) Potri.008G134300 [exp] 83 / 8e-20 AT1G24620 219 / 2e-73 EF hand calcium-binding protein family (.1) Potri.010G107100 [exp] 82 / 2e-19 AT1G24620 220 / 2e-73 EF hand calcium-binding protein family (.1) Potri.007G042900 [exp] 81 / 6e-19 AT2G15680 169 / 1e-53 calmodulin-like 30, Calcium-binding EF-hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10028657 pacid=23164592 polypeptide=Lus10028657 locus=Lus10028657.g ID=Lus10028657.BGIv1.0 annot-version=v1.0 ATGCTTCTTTCTCACTATTCCAATTCCTCCAAACAATTCCCCACCACCGATCACCTCATCATGCCCCCCTCCTCCACCTCCTCCTCCGACACAGCCTCCG CCGTAGCCGTCGGTCTACAATCCGATGACCTCCTCCGGATATTCCACCAGCTGGACAAGAACGGCGATGGGTTTCTATCGATTGACGAGCTGAGCTGGCT CCTCGATCGAATCGGGGGAGGGTCATCGTCATCACTCCAGTTCACGGTGGCGGAGCTGGAGTTCTCGATCGGGAAGTCGAGCCTGGACTTCGGGGAGTTT ATCGAATTCTACGAGTCGATATCGGGGGGAAAGTCGGACTCTTTCGAGGCGGTGGAGAAGGATTTGGAGAAGGCGTTCAGAGTGTTTGACTTGAACGGCG ACGGGTTCATAACGAGCGAGGAGCTCCAGAAGGTGCTGGAGAGGCTCGGCCTGTGGGACGAGGCGAAGGATTGCCGGAGTATGATCTGCGTTTACGACAC AAATCACGATGGGGTTCTCGATTTGGACGAGTTCAAGAGGATGATGATGGTGAATCGGAGGGGCTGA
AA sequence Show only first row Show all	>Lus10028657 pacid=23164592 polypeptide=Lus10028657 locus=Lus10028657.g ID=Lus10028657.BGIv1.0 annot-version=v1.0 MLLSHYSNSSKQFPTTDHLIMPPSSTSSSDTASAVAVGLQSDDLLRIFHQLDKNGDGFLSIDELSWLLDRIGGGSSSSLQFTVAELEFSIGKSSLDFGEF IEFYESISGGKSDSFEAVEKDLEKAFRVFDLNGDGFITSEELQKVLERLGLWDEAKDCRSMICVYDTNHDGVLDLDEFKRMMMVNRRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21550			Calcium-binding EF-hand family...		Lus10028657 [exp]	0	1
AT5G65660			hydroxyproline-rich glycoprote...		Lus10042927 [exp]	8.9	0.8266
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10026143 [exp]	12.3	0.8665
AT5G15870			glycosyl hydrolase family 81 p...		Lus10021987 [exp]	14.7	0.8184
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10011748 [exp]	15.8	0.8181
AT2G46620			P-loop containing nucleoside t...		Lus10005991 [exp]	16.7	0.8096
AT1G52330			Late embryogenesis abundant (L...		Lus10011458 [exp]	17.0	0.8369
AT1G49740			PLC-like phosphodiesterases su...		Lus10014072 [exp]	19.8	0.7974
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10010403 [exp]	21.1	0.8459
AT1G23390			Kelch repeat-containing F-box ...		Lus10029128 [exp]	22.2	0.8265
AT5G56980			unknown protein		Lus10014282 [exp]	22.5	0.7915

Compare expression of checked genes

Lus10028657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.