Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52560 1006 / 0 ATUSP UDP-sugar pyrophosphorylase (.1) AT2G35020 74 / 1e-13 GlcNAc1pUT2 N-acetylglucosamine-1-phosphate uridylyltransferase 2 (.1) AT1G31070 73 / 2e-13 GlcNAc1pUT1 N-acetylglucosamine-1-phosphate uridylyltransferase 1 (.1.2) AT3G56040 45 / 0.0002 UGP3 UDP-glucose pyrophosphorylase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000971 [exp] 1208 / 0 AT5G52560 1004 / 0.0 UDP-sugar pyrophosphorylase (.1) Lus10038366 [exp] 76 / 2e-14 AT1G31070 846 / 0.0 N-acetylglucosamine-1-phosphate uridylyltransferase 1 (.1.2) Lus10036227 [exp] 76 / 3e-14 AT1G31070 844 / 0.0 N-acetylglucosamine-1-phosphate uridylyltransferase 1 (.1.2) Lus10007512 [exp] 49 / 2e-05 AT3G56040 1101 / 0.0 UDP-glucose pyrophosphorylase 3 (.1) Lus10017443 [exp] 48 / 2e-05 AT3G56040 1100 / 0.0 UDP-glucose pyrophosphorylase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G077400 [exp] 1070 / 0 AT5G52560 1040 / 0.0 UDP-sugar pyrophosphorylase (.1) Potri.003G074700 [exp] 72 / 3e-13 AT2G35020 825 / 0.0 N-acetylglucosamine-1-phosphate uridylyltransferase 2 (.1) Potri.001G159700 [exp] 66 / 4e-11 AT2G35020 779 / 0.0 N-acetylglucosamine-1-phosphate uridylyltransferase 2 (.1) Potri.005G183200 [exp] 44 / 1e-05 AT5G52560 45 / 5e-07 UDP-sugar pyrophosphorylase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01704 [flax] [poplar] UDPGP UTP--glucose-1-phosphate uridylyltransferase
Representative CDS sequence Show only first row Show all	>Lus10028658 pacid=23164632 polypeptide=Lus10028658 locus=Lus10028658.g ID=Lus10028658.BGIv1.0 annot-version=v1.0 ATGGAATCCGCGACGGAAGCAGTTTCCAAGCTCGACATCAATGGCGATTTCTCATCCTCCGTCCCCAATCTCCACCGCAACATCACTCTCCTCTCCCCTG ACCAGATCGAACTGGCGAAGATGCTGGTGGAGATGGGACAGAGTCACTTGTTCAGCGACTGGCCGGAGCCTGGAGTTGGCGACGACGAGAAGATCGCGTT CTTCGATCAGGTTGCTCGACTGCATTCAAGCTATCCTGGTGGATTAACATCTTATATTAAAACTGCCAGACAGCTGTTAGCTGACTCAAAAGCTGGCAAG AACCCTTTTGATGGTTTTACACCTTCGGTTCCAGCAGGAGAGAACCTGAGCTACGGTGATGAAACCTTCATGAAATTTGAAGAGGTGGGTGTAAAGGAAG CCCAGAATGCAGCGTTTGTTCTTGTTGCTGGTGGACTTGGGGAGCGTCTTGGTTACAATGGAATTAAGGTGGCTCTTCCACAAGAGACTACCACAGGAAC TTGCTTCTTACAGCACTACATTGAGAACGTTTTGGCTCTTCAGGAAGCTAGCTGTAAAATGACTGGAGGTCAATCCGAAAGGGATATTCCTTTTGCAATC ATGACGTCAGATGACACACATGCACGTACGCTGCAGCTTCTTGAATCCAATTCATATTTTGGGATGAAACCAGCTCAAATAAAGCTTTTGAAACAGGAGA AAGTTGCATGTTTAGAAGATAATGATGCAAGGCTTGCATTGGATCCCCAGAATAAATACAGAATTCAGACAAAACCTCATGGTCATGGTGATGTGCATGC ACTTCTCTACTCTAGTGGGACTCTTCAAGAATGGCAAAAGGGTGGTGTTAGGTGGGTTCTATTCTTCCAGGATACAAATGGACTTCTATTTAAGGCAATT CCAGCTTCATTAGGAGTCAGTGCCAGTAAAGGGTATCACGTTAACTCTCTTGCTGTTCCCCGGAAAGCTAAAGAAGCTATTGGAGGAATCACCAAGCTTA CTCATACGGATGGAAGGTCAATGGTGATCAATGTGGAATACAATCAACTTGATCCCCTACTGAGAGCAACCGGGTTTCCTGATGGAGATGTCAACTGCGA GACTGGCTATTCCCCTTTTCCAGGAAACATTAATCAATTGATTGTGGAAGTTGGACCATACCTTGAGGAGCTGAAGAAAACAGGAGGTGCTATAAAGGAG TTCGTGAATCCAAAATATAAAGATGCTACTAAAACAGCATTTAAGTCATCCACTCGTCTGGAATGCATGATGCAGGACTATCCAAAGACATTGCCTCCAT CGGCAAGGGTTGGATTTACGGTAATGGATGCATGGGTTGCTTATGCCCCAGTGAAGAACAACCCTGAGGATGCTGCTAAGGTACCCAAAGGGAATCCTTA CCACAGTGCAACTTCTGGAGAAATGTTCATCTACAGAGCAAACAGCCTCATTCTCAAGAAGGCTGGTGTCCAAGTGGAAGATCCGGTGAAGCAGGAATTC AACGGTCAAGAGGTCGAAGTATGGCCCCGAATCGTCTGGAAGCCAAAGTGGGCATTGACATTCGCAGACATAAAGAAGAAAATCGCTGGAACCTCCTCCA TTTCTCTAAACTCTACCTTAGCTCTTAAAGGTAGGAACATACTCATCGAAGATCTCTTATTAGACGGAGCTCTCCTAATCGAATCGCACGATGAAGCTGA GGTTAAAGTAGGGGGTACAGTTAAGAACAAGGGTTGGACCATCGAGAAAGTCGATTACAAGGACACTTCAGTACCCGAGGAAATCAGAATCAGAGGGTTC AAATTCCAGAAAGCAGAACAGCTCGAAAAGCACTACACCGAGCCCGGCAAATTCGAGCTGAAAGCTTGA
AA sequence Show only first row Show all	>Lus10028658 pacid=23164632 polypeptide=Lus10028658 locus=Lus10028658.g ID=Lus10028658.BGIv1.0 annot-version=v1.0 MESATEAVSKLDINGDFSSSVPNLHRNITLLSPDQIELAKMLVEMGQSHLFSDWPEPGVGDDEKIAFFDQVARLHSSYPGGLTSYIKTARQLLADSKAGK NPFDGFTPSVPAGENLSYGDETFMKFEEVGVKEAQNAAFVLVAGGLGERLGYNGIKVALPQETTTGTCFLQHYIENVLALQEASCKMTGGQSERDIPFAI MTSDDTHARTLQLLESNSYFGMKPAQIKLLKQEKVACLEDNDARLALDPQNKYRIQTKPHGHGDVHALLYSSGTLQEWQKGGVRWVLFFQDTNGLLFKAI PASLGVSASKGYHVNSLAVPRKAKEAIGGITKLTHTDGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNINQLIVEVGPYLEELKKTGGAIKE FVNPKYKDATKTAFKSSTRLECMMQDYPKTLPPSARVGFTVMDAWVAYAPVKNNPEDAAKVPKGNPYHSATSGEMFIYRANSLILKKAGVQVEDPVKQEF NGQEVEVWPRIVWKPKWALTFADIKKKIAGTSSISLNSTLALKGRNILIEDLLLDGALLIESHDEAEVKVGGTVKNKGWTIEKVDYKDTSVPEEIRIRGF KFQKAEQLEKHYTEPGKFELKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52560		ATUSP	UDP-sugar pyrophosphorylase (....		Lus10028658 [exp]	0	1
AT2G27740			Family of unknown function (DU...		Lus10019529 [exp]	4.0	0.8784
AT3G27000		ATARP2, WRM, AR...	WURM, actin related protein 2 ...		Lus10006156 [exp]	6.9	0.8849
AT5G26667		PYR6	P-loop containing nucleoside t...		Lus10031611 [exp]	12.0	0.8520
AT5G11710			ENTH/VHS family protein (.1)		Lus10007460 [exp]	13.0	0.8587
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10026495 [exp]	13.8	0.8476
AT4G38040			Exostosin family protein (.1)		Lus10002664 [exp]	14.4	0.8535
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Lus10002876 [exp]	15.3	0.8732
AT1G21660			Chaperone DnaJ-domain superfam...		Lus10028548 [exp]	16.3	0.8398
AT5G53340			Galactosyltransferase family p...		Lus10032350 [exp]	17.5	0.8475
AT2G40280			S-adenosyl-L-methionine-depend...		Lus10007520 [exp]	19.7	0.8415

Compare expression of checked genes

Lus10028658 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.