Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09760 305 / 7e-105 U2A' U2 small nuclear ribonucleoprotein A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000970 [exp] 436 / 2e-155 AT1G09760 367 / 1e-128 U2 small nuclear ribonucleoprotein A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G158800 [exp] 338 / 2e-117 AT1G09760 283 / 3e-96 U2 small nuclear ribonucleoprotein A (.1) Potri.001G072100 [exp] 337 / 4e-117 AT1G09760 328 / 4e-114 U2 small nuclear ribonucleoprotein A (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028659 pacid=23164464 polypeptide=Lus10028659 locus=Lus10028659.g ID=Lus10028659.BGIv1.0 annot-version=v1.0 ATGGTGAGGCTCACCGCCGATTTGATTTGGAACAGCCCGCATTTCTTCAACGCCATCAAGGAGCGCGAATTGGACCTCCGAGGTAATAAGATCCCTGTGA TTGAAAACTTGGGCGCTACTGAGGATCAATTCGATACCATTGACTTGTCGGATAATGAGATTGTCAAGCTGGAAAACCTTCCCTTTCTTAATCGGCTGGG CACATTAATAATGAACAACAACAGGATTACTCGTATCAGCCCCATAATTGGAGAGTTCTTGCCGAAATTGCACTCGTTAGTCCTGACAAACAACAGACTC GTCAATTTGGTGGAGATCGATCCACTTGCGTCTCTCCCGAATCTGCAGTACCTCAGTCTTCTGGATAACAACATTACTAAGCGGCCAAATTACAGGCTAT ATGTAATTTTCAAGCTGAAGGTTCTTCGGGTGCTCGACTTTAAGAAAGTCAAAGCAAAGGAGCGAGCTGAGGCGGAGAACTTGTTTGCTTCCAAGGAAGT AGAAGAGGAAGCTAAGAAGGAAGTTGCTAAGGCACCGGCTCCTATTGAGGTTCAAAACGATGCTGCAGATGAACAACAGAGTGCCAAGGTTGTTGGACCG ACTCCTGAACAAATTCTGGCAATCAAGGCTGCCATTGTGAACTCTCAGACCCTTGAAGAAGTCGCAAGACTCGAGAAGGCGTTGAGCACAGGCCAGATTC CGGCCGATTTGCACATGCTGGACGATGTCCACCAGCCCAACAGCTCAAAAGACAAAGGTGACGAAATGGAAACCGGTAATCTCCCCAAGACCGATAGCGA ACCTACTGCCATGGATCAAAGTTCCGAAAAATTGAACTCTCATGTGTAA
AA sequence Show only first row Show all	>Lus10028659 pacid=23164464 polypeptide=Lus10028659 locus=Lus10028659.g ID=Lus10028659.BGIv1.0 annot-version=v1.0 MVRLTADLIWNSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENLPFLNRLGTLIMNNNRITRISPIIGEFLPKLHSLVLTNNRL VNLVEIDPLASLPNLQYLSLLDNNITKRPNYRLYVIFKLKVLRVLDFKKVKAKERAEAENLFASKEVEEEAKKEVAKAPAPIEVQNDAADEQQSAKVVGP TPEQILAIKAAIVNSQTLEEVARLEKALSTGQIPADLHMLDDVHQPNSSKDKGDEMETGNLPKTDSEPTAMDQSSEKLNSHV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Lus10028659 [exp]	0	1
AT4G01560		MEE49	maternal effect embryo arrest ...		Lus10030171 [exp]	2.2	0.9465
AT2G37020			Translin family protein (.1.2)		Lus10020710 [exp]	3.7	0.9352
AT3G15460			Ribosomal RNA processing Brix ...		Lus10027900 [exp]	4.0	0.9344
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10040712 [exp]	4.2	0.9412
AT1G09690			Translation protein SH3-like f...		Lus10029302 [exp]	4.5	0.9422
AT2G38730			Cyclophilin-like peptidyl-prol...		Lus10026161 [exp]	6.0	0.9343
AT4G35050		NFC3, MSI3	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10005074 [exp]	6.5	0.9313
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043478 [exp]	6.9	0.9318
AT5G07900			Mitochondrial transcription te...		Lus10036450 [exp]	8.8	0.8961
AT5G11300		CYC2BAT, CYCA2;...	CYCLIN A2;2, mitotic-like cycl...		Lus10008103 [exp]	9.2	0.9368

Compare expression of checked genes

Lus10028659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.