Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77280 794 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G21590 683 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G63940 635 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G16750 380 / 2e-122 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G35030 363 / 2e-118 Protein kinase superfamily protein (.1.2.3) AT5G65530 278 / 2e-85 Protein kinase superfamily protein (.1) AT5G18910 268 / 7e-81 Protein kinase superfamily protein (.1) AT5G35960 263 / 2e-80 Protein kinase family protein (.1) AT2G18890 260 / 1e-79 Protein kinase superfamily protein (.1.2) AT5G37790 265 / 2e-79 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000968 [exp] 1379 / 0 AT1G77280 844 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024154 [exp] 631 / 0 AT1G77280 668 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10039518 [exp] 489 / 5e-164 AT1G77280 610 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10014122 [exp] 461 / 6e-153 AT2G16750 507 / 4e-173 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10019787 [exp] 454 / 3e-150 AT2G16750 513 / 4e-175 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10013566 [exp] 313 / 3e-98 AT4G35030 327 / 3e-107 Protein kinase superfamily protein (.1.2.3) Lus10017273 [exp] 316 / 5e-98 AT4G35030 325 / 2e-105 Protein kinase superfamily protein (.1.2.3) Lus10035949 [exp] 272 / 1e-82 AT5G65530 521 / 0.0 Protein kinase superfamily protein (.1) Lus10019990 [exp] 273 / 8e-82 AT5G57670 628 / 0.0 Protein kinase superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G182800 [exp] 929 / 0 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G077900 [exp] 877 / 0 AT1G77280 797 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G102400 [exp] 748 / 0 AT5G63940 722 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G067000 [exp] 727 / 0 AT5G63940 690 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G175100 [exp] 511 / 2e-172 AT2G16750 564 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.009G134700 [exp] 497 / 6e-167 AT2G16750 555 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G019300 [exp] 382 / 6e-121 AT4G35030 387 / 7e-127 Protein kinase superfamily protein (.1.2.3) Potri.006G173700 [exp] 288 / 1e-87 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2) Potri.018G096100 [exp] 286 / 6e-87 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2) Potri.013G028100 [exp] 278 / 4e-85 AT3G05140 548 / 0.0 ROP binding protein kinases 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10028661 pacid=23164453 polypeptide=Lus10028661 locus=Lus10028661.g ID=Lus10028661.BGIv1.0 annot-version=v1.0 ATGGTAAACAGCTCCGGCGACACCGTCGCCGTCGGCGGCGGCGGAAGGAAAGTGCTCGTCGGAGTGAAGATGGACTCATTAAGCAGGGAGCTACTCACTT GGGCGCTCGTCAAAGTAGCTGAGCCCGGTGATGTAGTTATTGCGCTCCATGTGCTCGGCAATAATCAAATTGTGGATCGAGATGGGAAATCATCGCTCTT GTCACTTGTGAAGGCCTTTGACTCTGTTCTCGCCGTCTATGAAGGCTTCTGCAACTTGAAGCAGGTGGATCTGAAGCTGAAGATTTGTAGGGGTTCATCA ATAAGGAAGATACTAGTACGGGAAGCGAACTCTTACTCAGCAAAGAAGCTGATACTGGGAGCTGTCAGTTCGCCAAATTACACAGTGGTGGTGAAGTCGC CAACCTCTGTGGCGAAGTACTGTGCGAAAAAGCTTGGGGATGCTTGTTCTGTGATTGCTGTTCATAATGGGAAGGTTGTGTTTCAAAGGCATCCTTCTCC CCCACTTGATCATTCAAATTCCCAAGGAGGAGATGACAGTAAGAGCAGCTGCAGGGTGCGTCGTGGTCTGCTTAACAAGATACAAAGGTCGATTTCATTA CACAAGAGCTCGAAAATCGTGAGTGAAGATGTTGGTGGTGGTGTTGTCAATGGGCAGACTTTACAAGAGGCCTTGATGAATGCACGTTCTTCTTCTGACA GCTTGGAGAGTGTCATGAAAGACCGCTGCTCGATTTGTAAGACACAGACGCAATCGAAACCTTCCGATTATAAGGAGCCACCAAGGAGTCGTGAAAGTGA CGACTCGTTGGCTCTAGTGCCTGTGCCGAAGGCAGAGGTAGCTTCGAGCTCGATTACCATGTTGGTCAAGCAATTGCCCGAGTCGAAACCTGGATGGCCA TTACTCAGCCGTGTGGCTTCGCGAGATATGAAGCCTGGGGTTCGACCAACGATGAGAAAGATCTCCGTGGTTCAGTGGGCATTGAGGCTTCCATCTAGGC AGCTTCAGTTGTCTATTACCAATGGGGAGGAATGTTACAAGTCTTGTTTGGATGAACAAACCGGTGCAATCGTTCCGGTTGGTTTCGAGACGGTGACGAG CTTACATTCTCCTGAATATATCTTAAACTCTTTACCAAAAGAGTTGGAAGATCTTCATGAGAAGTACTCTGCAACTTGCAGATTGTTTAAGTTACAAGAA CTTGCGTCAGCCACATCAAGTTTCTTACCAGAGAACTTGATTGGCAGAGGAGGAAGCAGCCAGGTATACAAAGGATGCCTTCCTGATGGCCAAGAGCTCG CGGTGAAAATCTTGAAGCCGTCTGAAGATGTGATCAAGGAGTTTGTTCTGGAAATCGAAATCATCACAGCTTTACATCACAAGAACATCATTTCTCTCCT CGGCTTCTGTTTCGAGGACAACAAGCATCTTCTCTTAGTGTATGACTTGCTTTCAAGGGGAAACCTTGAAGAGAATCTTCATGGTAACCGAAAAGACACT GCATTCGGTTGGAGTGAGAGATATAGGGTGGCTGTAGGAGTTGCTGAGGCCTTGGATTATCTCCACAATACCAGCGATCATCCTGTGATCCATAGGGATG TGAAATCTTCCAACATATTATTGTCTGAAGATTTCGAGCCTCAGCTCTCTGATTTCGGACTTGCTAAATGGGCATCAACATCTTCTTCTCACATAGTTTG CACTGACGTTGCTGGAACTTTCGGTTACTTGGCTCCTGAATACTTCATGTATGGGAAAGTAAATGACAAGATTGATGTGTACGCATTCGGTGTCGTGCTC CTAGAGCTTATTTCCGGAAGAAAGCCTATCAGCAATGATCTTCCTAAAGGACAAGAGAGCGTGGTGATGTGGGCCAAACCAATCCTTCATAGTGGCAAGA TCTCTCAGTTACTAGATTCAAGCTTGGGTGGTGACTATGATAATGAGGAGATTCAGAGGATGGTATTGGCTGCAACTCTCTGCATACGGCGTGCCCCTCG AGCTAGGCCTCCAATGAGCACTGTCTTGAAGCTGTTGAAAGGAGATGCCGAGGTAACGAAATGGGCGAAACAAGAAGTGAACGTTGCTGCAGAAGACTCG GACTCGCTCGATGAAGGAGTGAGTCCACGCTCCGACCTCAAGTCCCACCTTAACCTCGCAATGCTCGACGTGGAAGATGACTCCCTTTCGTCAAGTAGCA TCGAGCAGAACTTGTCGCTCGAGGAGTACCTCCAAGGCAGGTGGAGCCGCTCGTCGAGCTTTGACTAA
AA sequence Show only first row Show all	>Lus10028661 pacid=23164453 polypeptide=Lus10028661 locus=Lus10028661.g ID=Lus10028661.BGIv1.0 annot-version=v1.0 MVNSSGDTVAVGGGGRKVLVGVKMDSLSRELLTWALVKVAEPGDVVIALHVLGNNQIVDRDGKSSLLSLVKAFDSVLAVYEGFCNLKQVDLKLKICRGSS IRKILVREANSYSAKKLILGAVSSPNYTVVVKSPTSVAKYCAKKLGDACSVIAVHNGKVVFQRHPSPPLDHSNSQGGDDSKSSCRVRRGLLNKIQRSISL HKSSKIVSEDVGGGVVNGQTLQEALMNARSSSDSLESVMKDRCSICKTQTQSKPSDYKEPPRSRESDDSLALVPVPKAEVASSSITMLVKQLPESKPGWP LLSRVASRDMKPGVRPTMRKISVVQWALRLPSRQLQLSITNGEECYKSCLDEQTGAIVPVGFETVTSLHSPEYILNSLPKELEDLHEKYSATCRLFKLQE LASATSSFLPENLIGRGGSSQVYKGCLPDGQELAVKILKPSEDVIKEFVLEIEIITALHHKNIISLLGFCFEDNKHLLLVYDLLSRGNLEENLHGNRKDT AFGWSERYRVAVGVAEALDYLHNTSDHPVIHRDVKSSNILLSEDFEPQLSDFGLAKWASTSSSHIVCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVL LELISGRKPISNDLPKGQESVVMWAKPILHSGKISQLLDSSLGGDYDNEEIQRMVLAATLCIRRAPRARPPMSTVLKLLKGDAEVTKWAKQEVNVAAEDS DSLDEGVSPRSDLKSHLNLAMLDVEDDSLSSSSIEQNLSLEEYLQGRWSRSSSFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77280			Protein kinase protein with ad...		Lus10028661 [exp]	0	1
AT1G04400		FHA, AT-PHH1, C...	cryptochrome 2 (.1.2)		Lus10021188 [exp]	1.4	0.7889
AT2G05170		ATVPS11	vacuolar protein sorting 11 (....		Lus10006378 [exp]	2.2	0.8570
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10012835 [exp]	5.7	0.7771
AT5G26200			Mitochondrial substrate carrie...		Lus10025015 [exp]	6.0	0.7741
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10030485 [exp]	9.7	0.7764
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10010028 [exp]	13.9	0.6261
AT2G43330		ATINT1	inositol transporter 1 (.1)		Lus10025565 [exp]	17.9	0.7776
AT1G71090			Auxin efflux carrier family pr...		Lus10016705 [exp]	19.7	0.7629
AT2G01650		PUX2	plant UBX domain-containing pr...		Lus10021798 [exp]	22.3	0.7118
AT4G02350		SEC15B	exocyst complex component sec1...		Lus10009856 [exp]	24.1	0.6928

Compare expression of checked genes

Lus10028661 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.