Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06050 573 / 0 AtOPR3, DDE1, OPR3, OPDA-REDUCTASE DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) AT1G76690 395 / 2e-136 OPR2, ATOPR2 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) AT1G76680 390 / 1e-134 OPR1, ATOPR1 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) AT1G09400 348 / 5e-119 FMN-linked oxidoreductases superfamily protein (.1) AT1G18020 292 / 1e-97 FMN-linked oxidoreductases superfamily protein (.1) AT1G17990 292 / 1e-97 FMN-linked oxidoreductases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000966 [exp] 769 / 0 AT2G06050 576 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Lus10013218 [exp] 392 / 2e-135 AT1G76690 553 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Lus10001276 [exp] 385 / 9e-133 AT1G76680 597 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) Lus10009473 [exp] 372 / 2e-124 AT1G76690 568 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Lus10001275 [exp] 361 / 5e-123 AT1G76680 544 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) Lus10001274 [exp] 346 / 1e-117 AT1G76690 526 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Lus10030737 [exp] 195 / 9e-60 AT1G76680 258 / 1e-84 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G142800 [exp] 613 / 0 AT2G06050 603 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Potri.018G065600 [exp] 595 / 0 AT2G06050 599 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Potri.004G212100 [exp] 551 / 0 AT2G06050 536 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Potri.013G103000 [exp] 402 / 1e-139 AT1G76690 568 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G102700 [exp] 399 / 4e-138 AT1G76690 629 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G102750 [exp] 399 / 4e-138 AT1G76690 580 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G102800 [exp] 397 / 1e-137 AT1G76690 576 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G102900 [exp] 395 / 1e-136 AT1G76690 571 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.003G004600 [exp] 389 / 3e-134 AT1G76680 559 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) Potri.003G004200 [exp] 389 / 4e-134 AT1G76680 558 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00724 [flax] [poplar] Oxidored_FMN NADH:flavin oxidoreductase / NADH oxidase family
Representative CDS sequence Show only first row Show all	>Lus10028663 pacid=23164631 polypeptide=Lus10028663 locus=Lus10028663.g ID=Lus10028663.BGIv1.0 annot-version=v1.0 ATGGGAGGAGCTGAAGCCGCTGGATCTGGATCATCGGCGACGCTGTTCTCACCCTACAAGATGGGCAAGTTCAGCCTTTCCCACAGAATTGTGCTGGCGC CGATGACAAGGTGTAGGGCGGCGGAGGGAGGTATTCCGACGGAGATGATGGCGGATTACTACTCCCAGAGATCGACTCCGGGAGGATTGCTCATCTCCGA AGGCACCAGCGTCCATCCTACTGCTCCTGGGTTTCCTCGCGTGCCGGGGATTTACACCGAAGAGCAAGTGGAAGCGTGGAGGAAAGTAGTGGACGCAGTT CATGCCAAAGGAAGCATCATCTTCTGCCAGCTCTGGCACGTCGGCCGTGCTTCCCATCAAGTGTATCAACCGGGTGGAGCTGCACCGATCTCGTCAACCA CCAAGCCTGTCTCGAAAAGGGGTCGAATCCTTATGCCGGATGGCAGCTGGGCGCCTTACCCGACTCCTCGACAGTTGGAGACCTCCGAGATACCGGGTGT GGTCGAGATGTATCGCCACTCGGCAGTCAATGCCATTAGAGCAGGGTTTGACGGCGTTGAGATCCATAGTGCACACGGCTACTTGATCGACCAGTTTCTC AAGGACGGGATCAACGAAAGAAGCGACAAGTACGGTGGATCCATCGACAACAGATGCAGGTTCCTGATGGAAATTGTTCAGGCAGTGGTCACTGCCGTTG GTGCACATAGATTAGGGGTCAGGATGTCACCAGCGATCGACCACCTAGACGCCATCGACTCAGACCCGCTCAAGCTAGGCCTAGCAGTAGTGGAGAGGCT CAACAAGCTACAGTGTAAAAGTGGAGCTACGAATAAGTTGGCGTACCTCCACGTGACCCAACCTCGCTACACTGCCTACGGACAGACCGAGTCCGGCAGG CCGGGGAGCGAGGAGGAAGAGGCCGCCTTGATGAGGACCCTGAGGGATGCTTACGAGGGAACGTTCATGGCTAGTGGCGCTTACACTAGGGAGCTAGGGC TTGAAGCTGTGGCTCGAGGGGATGCTGATTTGGTCTCCTATGGTAGGCTCTTTGTGTCCAATCCTGACTTGGTGTTGAGGTTTAAGGTTGATGCACCCTT GAATAGGTACAATAGGAAGACTTTCTATACCCATGATGTTGTTGGATATACTGACTATCCTTTCATGGAGAAAGCTAAACTTTGA
AA sequence Show only first row Show all	>Lus10028663 pacid=23164631 polypeptide=Lus10028663 locus=Lus10028663.g ID=Lus10028663.BGIv1.0 annot-version=v1.0 MGGAEAAGSGSSATLFSPYKMGKFSLSHRIVLAPMTRCRAAEGGIPTEMMADYYSQRSTPGGLLISEGTSVHPTAPGFPRVPGIYTEEQVEAWRKVVDAV HAKGSIIFCQLWHVGRASHQVYQPGGAAPISSTTKPVSKRGRILMPDGSWAPYPTPRQLETSEIPGVVEMYRHSAVNAIRAGFDGVEIHSAHGYLIDQFL KDGINERSDKYGGSIDNRCRFLMEIVQAVVTAVGAHRLGVRMSPAIDHLDAIDSDPLKLGLAVVERLNKLQCKSGATNKLAYLHVTQPRYTAYGQTESGR PGSEEEEAALMRTLRDAYEGTFMASGAYTRELGLEAVARGDADLVSYGRLFVSNPDLVLRFKVDAPLNRYNRKTFYTHDVVGYTDYPFMEKAKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G06050		AtOPR3, DDE1, O...	DELAYED DEHISCENCE 1, oxophyto...		Lus10028663 [exp]	0	1
AT5G67150			HXXXD-type acyl-transferase fa...		Lus10041591 [exp]	3.2	0.8158
AT2G46490			unknown protein		Lus10040009 [exp]	5.5	0.7637
AT3G22740		HMT3	homocysteine S-methyltransfera...		Lus10006602 [exp]	7.2	0.7210
AT1G01260	bHLH	bHLH013, INU4	basic helix-loop-helix (bHLH) ...		Lus10030243 [exp]	11.7	0.8113
AT1G30135	ZIM	TIFY5A, JAZ8	jasmonate-zim-domain protein 8...		Lus10038506 [exp]	16.9	0.7764
AT3G25780		AOC3, AOC2	allene oxide cyclase 3 (.1)		Lus10033535 [exp]	17.7	0.7714
AT4G25030			unknown protein		Lus10041415 [exp]	17.7	0.7699
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Lus10004500 [exp]	27.9	0.7756
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10035366 [exp]	28.2	0.7723
AT4G17880	bHLH	bHLH004, MYC4	Basic helix-loop-helix (bHLH) ...		Lus10000037 [exp]	35.3	0.7479

Compare expression of checked genes

Lus10028663 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.