Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17140 54 / 7e-09 Cysteine proteinases superfamily protein (.1) AT3G48350 58 / 1e-08 CEP3 cysteine endopeptidase 3, Cysteine proteinases superfamily protein (.1) AT5G50260 58 / 1e-08 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT3G49340 56 / 5e-08 Cysteine proteinases superfamily protein (.1) AT5G02920 55 / 5e-08 F-box/RNI-like superfamily protein (.1) AT2G27420 55 / 7e-08 Cysteine proteinases superfamily protein (.1) AT5G03100 53 / 3e-07 F-box/RNI-like superfamily protein (.1) AT1G29110 53 / 3e-07 Cysteine proteinases superfamily protein (.1) AT3G43960 53 / 4e-07 Cysteine proteinases superfamily protein (.1) AT3G18150 53 / 4e-07 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028675 [exp] 620 / 0 AT1G67190 44 / 1e-04 F-box/RNI-like superfamily protein (.1.2) Lus10017530 [exp] 391 / 4e-129 AT5G22660 55 / 8e-08 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Lus10042272 [exp] 121 / 1e-29 AT4G03220 65 / 4e-11 Protein with RNI-like/FBD-like domains (.1) Lus10018543 [exp] 95 / 1e-19 AT1G03510 534 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029083 [exp] 86 / 2e-17 AT1G67390 54 / 6e-08 F-box family protein (.1) Lus10037440 [exp] 78 / 1e-14 AT1G69630 84 / 5e-17 F-box/RNI-like superfamily protein (.1) Lus10037289 [exp] 76 / 5e-14 AT5G02920 61 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10029952 [exp] 73 / 1e-13 AT5G03100 68 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10036905 [exp] 69 / 3e-13 AT5G22660 54 / 1e-08 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G395000 [exp] 59 / 5e-09 AT4G14103 89 / 4e-19 F-box/RNI-like superfamily protein (.1.2) Potri.015G087500 [exp] 58 / 9e-09 AT5G50260 530 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Potri.012G090900 [exp] 57 / 2e-08 AT5G50260 561 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Potri.004G056366 [exp] 57 / 2e-08 AT5G45890 416 / 5e-146 senescence-associated gene 12 (.1) Potri.004G056500 [exp] 57 / 3e-08 AT5G45890 417 / 2e-146 senescence-associated gene 12 (.1) Potri.004G056000 [exp] 57 / 3e-08 AT5G45890 417 / 2e-146 senescence-associated gene 12 (.1) Potri.004G056258 [exp] 56 / 4e-08 AT5G45890 417 / 8e-147 senescence-associated gene 12 (.1) Potri.004G056316 [exp] 56 / 4e-08 AT5G45890 419 / 3e-147 senescence-associated gene 12 (.1) Potri.004G056100 [exp] 56 / 4e-08 AT5G45890 419 / 2e-147 senescence-associated gene 12 (.1) Potri.004G056200 [exp] 55 / 8e-08 AT5G45890 420 / 1e-147 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10028664 pacid=23164559 polypeptide=Lus10028664 locus=Lus10028664.g ID=Lus10028664.BGIv1.0 annot-version=v1.0 ATGGGTTTCACCAACGATGAAGATGCCGAAAGAGTCGCATTTTCCATCCAGGAGCTGGAGGATAATCCGAAGTTGCCAGTAGGTTCGGATGGAATAGTAT CGCAAATCAACACCCTTGAGAAGCACATTGGGGAGCACGGGCTCGCCCTAAAAAAGGACTACCCGTGTGGACCGTCACGCAGATATGAACGCGAAAAAGC CTTAGACAAAGGAAAAAGAAGCGGAAAGAGTAAAAAGAAAAATGCCAACGAGAAACAGAAGTGGGGGAGAATGAAAGTCCCGATCTCAAATTGCACGCAA CATATCGGAAACGAAGATGAGATTAAAGCCCTTGTAAAAGGAAGGCCGATAATAGCTATCGTTGATGCTACAGAAGAACTCGACAGATGGACTGAAAAAC AGGAGGACGAAATCTATGAAGGACCGAAATTCCGTCGCAAAGAGAATGAGCGAGTTCTTCACGCTCTGCTCATAATTGGATATAAGGCAACGGGCGACAC AATCAATTACTGGATCGTTAGGAACTCTTGGGGTGCGGAATGGGGGTGCAACGGATACGCACGAATCAGACCCGGATCACACCGTCTTCCTTCGATCTTT TTGACATATTTCACTTACGAGAGATCCGCCATGGATCGATTATCGGAGCTACCAGACGAGATCATCCATAACATAATAGCACGGATACCACATCGACATG CAAACCTAGCAGCCAAACTCACCATACTTTCGAAAAGGTGGAGCCACCTCTGGCTCTCGTATCCGATCCTCGAATTCGATGATGAATCCGTCGATCCCTT TTGTGATGAAAACGTTCGCGGTCGACTTGCAGCTGCCCCGCCTGGTAGTACCAAACTGAAAGGATTCTCTGCCGCCACCACGAAGAAGTTCACCGCACAA TCTTTCACTCTGAATATCGAAGGAATCAAAGTACGTCTCGAGTATCCATCAGAAGAATTAGTCCGTTTGCTCCTTGATACATTGGCTATGGTTTCGAGCA GAGAACCCGAAAAGATTGATATCTATGTTAGGTATTCATACCCAATTACACTCGCCCCTTTGATCAACAACCGCCGCCTCGGAATTCTCAAGCTCAGAGG TTGCAAACTTGGGGAGCTATCAACTTACGTATTCAAAGAGATGATAAACCTTCGAGAACTCTACCTCTTGCGTATGACCATCGACGACATCACCCTAAAC AGCCTGATTGCGAGTGCTCCTTCTTTAGAGATTTTGAAACTCGAAAGTCTTGAAATCCATCCCAAGAGGCTTCAAATCTGCAACCATCCCAAGTTGAAAT CGATCCTCTTCCACTGTATTAGCGTAAAGGAATTCATTCAAATCAAAGGTGCGCGTTCTCTCGAAACCCTAGAGTTCTTATGCTCGACTGGTGGTGAACC ACGTGTTGAGACTTCCACCTCGACGTTTCGACTGCTCAAGATCCAATATCATTCTGGGAGAAAAGCGAGTTTCCTCAACAATCTGATCTCCGCATCTCCG TGTCTGGAGGAGCTTTACCTGTCTGAGATATCCGAAGTAGACGGACTCAACATCGTAAACCCTAGCGTTCAGCGTGTGACTCTGCGCCGTTCGAGGCTAT ATTTTCCATTGCGTGGCAAGAACACGATTCGAATCGATGCCCCCAAGTTGGTTCGGTACGAGTGCCACGAATCTATCGGATGTCTTCCTTCGTTGAGTTT CGCCACTGGTCTTGAAGCATCAGACTGCTGTGTAGCATACTTGTCAAGCTATGGAGTTGCGATTACACAGAAAGAGTTCATAGACGTGAAGTGCTTCCTC GCCAAGTTAAGGCCGCAGTTTCGATTCATCAGTGTCTCCTTGTTCAGCTCCCGTGATAGGGAGGATGAGTGTACTTTCGACCGGGATCAGATTCAAGATG GCACGCCTGCTATAGTCATCAATTGGCTCTATTTAAACTCGTACGGCCTCCGAAATTTACCTGGCTTGAAGGCTTTTTTCGACGGTCTATTCTGGACTTG TCTTCCTCTGAACTTATCGATAGCTAGAAGTGCTCCTTATGGCAGCAACGATGATTGGTCTAAATGTCTCAAGTAA
AA sequence Show only first row Show all	>Lus10028664 pacid=23164559 polypeptide=Lus10028664 locus=Lus10028664.g ID=Lus10028664.BGIv1.0 annot-version=v1.0 MGFTNDEDAERVAFSIQELEDNPKLPVGSDGIVSQINTLEKHIGEHGLALKKDYPCGPSRRYEREKALDKGKRSGKSKKKNANEKQKWGRMKVPISNCTQ HIGNEDEIKALVKGRPIIAIVDATEELDRWTEKQEDEIYEGPKFRRKENERVLHALLIIGYKATGDTINYWIVRNSWGAEWGCNGYARIRPGSHRLPSIF LTYFTYERSAMDRLSELPDEIIHNIIARIPHRHANLAAKLTILSKRWSHLWLSYPILEFDDESVDPFCDENVRGRLAAAPPGSTKLKGFSAATTKKFTAQ SFTLNIEGIKVRLEYPSEELVRLLLDTLAMVSSREPEKIDIYVRYSYPITLAPLINNRRLGILKLRGCKLGELSTYVFKEMINLRELYLLRMTIDDITLN SLIASAPSLEILKLESLEIHPKRLQICNHPKLKSILFHCISVKEFIQIKGARSLETLEFLCSTGGEPRVETSTSTFRLLKIQYHSGRKASFLNNLISASP CLEELYLSEISEVDGLNIVNPSVQRVTLRRSRLYFPLRGKNTIRIDAPKLVRYECHESIGCLPSLSFATGLEASDCCVAYLSSYGVAITQKEFIDVKCFL AKLRPQFRFISVSLFSSRDREDECTFDRDQIQDGTPAIVINWLYLNSYGLRNLPGLKAFFDGLFWTCLPLNLSIARSAPYGSNDDWSKCLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10028664 [exp]	0	1
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Lus10002972 [exp]	3.5	1.0000
AT1G18720			Protein of unknown function (D...		Lus10001647 [exp]	3.7	1.0000
AT2G23810		TET8	tetraspanin8 (.1)		Lus10027256 [exp]	6.6	1.0000
AT5G64820			unknown protein		Lus10025572 [exp]	7.5	1.0000
					Lus10007403 [exp]	9.5	1.0000
AT5G26330			Cupredoxin superfamily protein...		Lus10006680 [exp]	10.0	1.0000
AT4G36670		AtPMT6, AtPLT6	polyol/monosaccharide transpor...		Lus10017474 [exp]	11.8	1.0000
					Lus10038707 [exp]	12.6	1.0000
AT2G20825	ULT	ULT2	ULTRAPETALA 2, Developmental r...		Lus10038586 [exp]	17.0	1.0000
					Lus10039663 [exp]	18.3	1.0000

Compare expression of checked genes

Lus10028664 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.