Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34355 56 / 8e-08 FHA ATPS1 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006070 [exp] 150 / 1e-38 AT1G34355 234 / 7e-62 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1) Lus10009434 [exp] 143 / 4e-36 AT1G34355 233 / 1e-61 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G114700 [exp] 71 / 1e-12 AT1G34355 299 / 5e-84 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [flax] [poplar] SMAD-FHA PF00498 [flax] [poplar] FHA FHA domain
Representative CDS sequence Show only first row Show all	>Lus10028665 pacid=23164572 polypeptide=Lus10028665 locus=Lus10028665.g ID=Lus10028665.BGIv1.0 annot-version=v1.0 ATGGCGAGCAGGAATACACAATCGGCGACCTCACTCTGTTTTCAACCCTTTTTCCCCCAAGTCTTCAAGGATCTCTCGGTCATCAAGAAGATCTTGGTCC TCTCGCCGGAGAAAGACGCAGAACAAGGAAGTGTGCCGGCGGGAGCAGAAGTTTTCACCGTCGGACGTCATCCGGACTACACGACGATCATGGTGTTCAA TCCTAGCGTCAGTCGCCGGAGTTTCCAGATCAACGGAAAGCCTCGCACTCACCAGCTCTTCATCGCCGGCTCTGTGGACGGAACCTGGGTTTCGGGGAGG AGGATTGAACCTGGACTTTTCGTGGAGGTGGAGGAAGGAGATATGGTTGTAGTAGGTGCATTCCCGGAGAAAGTTACGGAGCTAGAAGAAGGAAGTTTAC GGGGAACAGAGCCTTCCACTCACCAGCTTTTCGTCGCCGATCTTGGCTCCGTTGACGCTTCGGGAAGGAGAATAAAGGAAGCAAATACGATTGTAGTAGG AGCATCGACGATGACTACTACGCCTCAGAAGGAATCGGAAGTTAAGGGTAAGGATACAATCACATTAGGAGCATCAAAGAATCGGGTGCCGCTGATCAGC CGAGCTTACGGAATTCAAAATCCTTCAGCTACTGCTGGTATGGTTGAAGAGCGAGAAGCGATGATGACTACTACGCCTCAGAAGGAATGGCAAGTTGTCT CAGGTGTATCCGCTGAATTGAACAACGGCATGCGCGTTCAATCACCTCCGGCCGTCAACTTCAAATCGAGTGATGCGAGGGAGACCGGAGACGATGGAGT GATTCATGATGAGGCCATTACCTCAGGAGGCCCTGAAGTTGAAACTGTTGTTGAGAATGCCCACAACGAGAACAAGGGCGAGGACGAGGTTGAGAACGAG GGCGAGGGCATTGTTGATGGTAATGACGATGCACTAGATGAAGAGGAAGTACCGTGCGAATCAGAGATAAAACAACAAGTTAAGAAAGCTAGTCGGATAA TGGACAGTCGTCGAGTTGCATTTGGGCTACTCCTCACTATACTATCTATTGGACTAGGCTGTGTTGCCGATGCCCAATCGCATCCGGCCAACCACTCCAA GTCCAGTGATGATAAGGTATTGAGCTTTCTGCCGATGTGGTTCTTTGCGGTGGTAATCGCCATAGCGCTGGGGGGAATAGCTTTCTTCTGCGCATCAAAC AGAGACAACGATGAAATCGTCAATGAAGCAGGCGATGTCGAACTGGTCAATGTCGTAATTGCAGGCAATGAAATAATTCAAGACCAAGCAGACCAAGGAG CAGGAGAACAACAACAACAGCAACCACAGCAACCACAGCAACCACAGCAACAAAATCTGGTAGAAATCGTAGACTTTAGGTGGAGCAACCTGATCAAATC AGAGATCTTACAGTGGCTTTTCTGTTACATTAGGCAGTTACAATGA
AA sequence Show only first row Show all	>Lus10028665 pacid=23164572 polypeptide=Lus10028665 locus=Lus10028665.g ID=Lus10028665.BGIv1.0 annot-version=v1.0 MASRNTQSATSLCFQPFFPQVFKDLSVIKKILVLSPEKDAEQGSVPAGAEVFTVGRHPDYTTIMVFNPSVSRRSFQINGKPRTHQLFIAGSVDGTWVSGR RIEPGLFVEVEEGDMVVVGAFPEKVTELEEGSLRGTEPSTHQLFVADLGSVDASGRRIKEANTIVVGASTMTTTPQKESEVKGKDTITLGASKNRVPLIS RAYGIQNPSATAGMVEEREAMMTTTPQKEWQVVSGVSAELNNGMRVQSPPAVNFKSSDARETGDDGVIHDEAITSGGPEVETVVENAHNENKGEDEVENE GEGIVDGNDDALDEEEVPCESEIKQQVKKASRIMDSRRVAFGLLLTILSIGLGCVADAQSHPANHSKSSDDKVLSFLPMWFFAVVIAIALGGIAFFCASN RDNDEIVNEAGDVELVNVVIAGNEIIQDQADQGAGEQQQQQPQQPQQPQQQNLVEIVDFRWSNLIKSEILQWLFCYIRQLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34355	FHA	ATPS1	PARALLEL SPINDLE 1, forkhead-a...		Lus10028665 [exp]	0	1
AT5G26330			Cupredoxin superfamily protein...		Lus10006680 [exp]	4.6	1.0000
AT5G64820			unknown protein		Lus10025572 [exp]	6.3	1.0000
AT4G36670		AtPMT6, AtPLT6	polyol/monosaccharide transpor...		Lus10017474 [exp]	7.9	1.0000
					Lus10038707 [exp]	9.2	1.0000
AT2G20825	ULT	ULT2	ULTRAPETALA 2, Developmental r...		Lus10038586 [exp]	13.4	1.0000
AT4G18360			Aldolase-type TIM barrel famil...		Lus10038144 [exp]	15.0	1.0000
					Lus10039663 [exp]	15.2	1.0000
AT5G12460			Protein of unknown function (D...		Lus10003179 [exp]	16.4	1.0000
AT1G68570			Major facilitator superfamily ...		Lus10038648 [exp]	16.5	1.0000
					Lus10003763 [exp]	17.3	1.0000

Compare expression of checked genes

Lus10028665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.