Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030337 [exp] 211 / 3e-69 ND / Lus10000977 [exp] 209 / 2e-65 ND / Lus10019049 [exp] 199 / 7e-64 ND / Lus10012377 [exp] 191 / 1e-61 ND / Lus10033137 [exp] 185 / 2e-58 ND / Lus10029529 [exp] 188 / 8e-57 ND / Lus10001930 [exp] 181 / 1e-56 ND / Lus10001193 [exp] 154 / 7e-46 ND / Lus10036318 [exp] 153 / 7e-46 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028667 pacid=23164524 polypeptide=Lus10028667 locus=Lus10028667.g ID=Lus10028667.BGIv1.0 annot-version=v1.0 ATGCATCCATCGAGGGACAAGTCATTGAAATCTAGAAGGCCTTGGATGACTCTTGCGCAAAGGTATTTACACCCTATTGCCCTAACTAGTTACAAATTTC ATGTGACAATAACCAGTTATTTACACATTCTTGTTGTGTACCGTTACGCGCAAAGACCACCATTTGTTTATCTCAATAATGCAGTCTCGGCGTGGGCAAT TGAGCTTTTGACAGAAGAGCTCTCGAAGGTTACACCATGTGACTGTGTGGTGAAGACAACCTATGAAATCCCGTGTATTTGTAGTTGGTATTCTAAGGAG GTTGCCGACGAGGAGTTTAAACCATACCACTTGCATCAGTTTTGGCGTTCATTGTGGTACACGAGCCCGACAGAGCACGAGATCTGGGCTGAGCATGATG CTGCGGACCGCCACATTATTGACGGGATGGTTCAAACGATTTGCTCTAGAGGGGGGGCTATCCGTCAGGGCGTTGAGTCGATTAGTTCGATAGGGATCAC TGTCGGCGTCCTCGATCCACCGTCTGGAAGCCCTACAGTAAGCTCCCAAGTACGACTCAGTCCCTGCCAGTCCACTTTACTAGCGGCCTCCTCCTTCCGG ACCCATGCAAGTCGGCTAGGTTTTCCTCCTCTCACGCCAACACTCGCGGAGGCATGTGACGACCCCGTAAAAGCGAGGTGTGGAGAGGTCGTGTGCAGAG AAGCCATGTGCGGAGAAGTCATGTGGGCGGAAGTCTGTGTGTTATCGTATTCAAACCCCGGCGGTGGACCCTCATCCTTGTCATCATCTTCCGGATACGA CCTAACCGGGTACGTAACAGGAGGGTACCGGTTAGGGGAGTCGTAG
AA sequence Show only first row Show all	>Lus10028667 pacid=23164524 polypeptide=Lus10028667 locus=Lus10028667.g ID=Lus10028667.BGIv1.0 annot-version=v1.0 MHPSRDKSLKSRRPWMTLAQRYLHPIALTSYKFHVTITSYLHILVVYRYAQRPPFVYLNNAVSAWAIELLTEELSKVTPCDCVVKTTYEIPCICSWYSKE VADEEFKPYHLHQFWRSLWYTSPTEHEIWAEHDAADRHIIDGMVQTICSRGGAIRQGVESISSIGITVGVLDPPSGSPTVSSQVRLSPCQSTLLAASSFR THASRLGFPPLTPTLAEACDDPVKARCGEVVCREAMCGEVMWAEVCVLSYSNPGGGPSSLSSSSGYDLTGYVTGGYRLGES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10028667 [exp]	0	1
AT5G22450			unknown protein		Lus10000530 [exp]	3.3	1.0000
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10003908 [exp]	4.7	1.0000
AT2G20420			ATP citrate lyase (ACL) family...		Lus10022902 [exp]	6.5	1.0000
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015750 [exp]	6.6	1.0000
AT4G13090		XTH2	xyloglucan endotransglucosylas...		Lus10032879 [exp]	7.7	1.0000
					Lus10007184 [exp]	8.5	1.0000
					Lus10007226 [exp]	9.2	1.0000
AT2G28605			Photosystem II reaction center...		Lus10009159 [exp]	9.8	1.0000
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10018414 [exp]	10.4	1.0000
					Lus10034743 [exp]	11.0	1.0000

Compare expression of checked genes

Lus10028667 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.