Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77320 140 / 2e-38 MEI1 meiosis defective 1, transcription coactivators (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000854 [exp] 200 / 2e-59 AT1G77320 796 / 0.0 meiosis defective 1, transcription coactivators (.1.2) Lus10028677 [exp] 196 / 9e-58 AT1G21640 1112 / 0.0 NAD kinase 2 (.1.2) Lus10028674 [exp] 0 / 1 AT1G77320 209 / 6e-63 meiosis defective 1, transcription coactivators (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G182500 [exp] 150 / 9e-42 AT1G77320 1011 / 0.0 meiosis defective 1, transcription coactivators (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028668 pacid=23164616 polypeptide=Lus10028668 locus=Lus10028668.g ID=Lus10028668.BGIv1.0 annot-version=v1.0 ATGAAGACGTACACGTTCAAAGGCACCAATGTGTTCATGTCCAGGAAACTCGTCCCGCCGGAGATCTACGACGCACTCAAGGTCAACGGCGCCGAAGTCT TCCCTTGCTCCGACCCTTCCCGCAACTCTCCCAACGATTACTACTTCATTTTGTCTCCCGATCACGAGAAGTTTGAGGATCTTAGAGCTAAGGTCCGCAG TGTGTTCTTTCATGTGCCAAAGAACACAAACAATTCCCTAAGCAAAGTTTCACTTGTTACCTTGCAATGGATGGTGTTAAGATGCCTAGCATCAGGCTTC GACATGGATGAGAAGGTTAAGCTTGAAAAGTTGGTTAAAGCGATGGGAGGACTTCTCTGTTCTAAGCCGACTATGGATGTTAGTTTCGTCATTGTGAAGG ATGTATTAGCTGCCAAGTACAAGGTGTTGTTTCAAATTGTTGGTTTTCACATGCTACTGTGTTCATACAGCAAGACAAAAGAACTAAGGAGCCCTGCTGC TTCTGGGGTCATTAATGTGGTTAGCACAACATGGCTTGAAGATTGTGATCGAGAAAAGCGAGATATTCCTGTTCGAGCTCAGCATATGGCATACTGCTAA
AA sequence Show only first row Show all	>Lus10028668 pacid=23164616 polypeptide=Lus10028668 locus=Lus10028668.g ID=Lus10028668.BGIv1.0 annot-version=v1.0 MKTYTFKGTNVFMSRKLVPPEIYDALKVNGAEVFPCSDPSRNSPNDYYFILSPDHEKFEDLRAKVRSVFFHVPKNTNNSLSKVSLVTLQWMVLRCLASGF DMDEKVKLEKLVKAMGGLLCSKPTMDVSFVIVKDVLAAKYKVLFQIVGFHMLLCSYSKTKELRSPAASGVINVVSTTWLEDCDREKRDIPVRAQHMAYC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77320		MEI1	meiosis defective 1, transcrip...		Lus10028668 [exp]	0	1
AT1G77310			unknown protein		Lus10028666 [exp]	1.0	0.8983
AT2G20410			RNA-binding ASCH domain protei...		Lus10028672 [exp]	2.0	0.7165
AT1G76280			Tetratricopeptide repeat (TPR)...		Lus10001597 [exp]	3.5	0.6924
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10006819 [exp]	6.3	0.6232
					Lus10022179 [exp]	7.9	0.5837
AT1G48310		CHR18, CHA18	chromatin remodeling factor18 ...		Lus10006642 [exp]	17.6	0.5429
AT2G01730		ATCPSF73-II, ED...	embryo sac development arrest ...		Lus10035763 [exp]	21.1	0.6010
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Lus10008025 [exp]	24.4	0.5940
AT4G05440		EDA35	embryo sac development arrest ...		Lus10006898 [exp]	26.6	0.5327
AT1G01920			SET domain-containing protein ...		Lus10016435 [exp]	31.0	0.5590

Compare expression of checked genes

Lus10028668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.