Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18250 95 / 3e-23 receptor serine/threonine kinase, putative (.1) AT1G70250 92 / 4e-22 receptor serine/threonine kinase, putative (.1) AT5G38280 92 / 5e-22 PR5K PR5-like receptor kinase (.1) AT5G38260 92 / 5e-22 Protein kinase superfamily protein (.1) AT1G66920 90 / 2e-21 Protein kinase superfamily protein (.1.2) AT5G38250 89 / 4e-21 Protein kinase family protein (.1) AT5G39020 87 / 2e-20 Malectin/receptor-like protein kinase family protein (.1) AT5G38240 87 / 2e-20 Protein kinase family protein (.1) AT5G39030 87 / 4e-20 Protein kinase superfamily protein (.1) AT1G66910 86 / 6e-20 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007934 [exp] 227 / 6e-72 AT5G38260 273 / 3e-83 Protein kinase superfamily protein (.1) Lus10013472 [exp] 212 / 1e-69 AT5G38280 177 / 2e-51 PR5-like receptor kinase (.1) Lus10000854 [exp] 187 / 2e-55 AT1G77320 796 / 0.0 meiosis defective 1, transcription coactivators (.1.2) Lus10014923 [exp] 103 / 3e-26 AT1G67000 335 / 2e-107 Protein kinase superfamily protein (.1) Lus10022359 [exp] 101 / 2e-25 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10025549 [exp] 96 / 9e-25 AT1G66980 209 / 1e-62 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10008335 [exp] 99 / 1e-24 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10025545 [exp] 97 / 2e-24 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10025492 [exp] 97 / 6e-24 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G125500 [exp] 143 / 2e-40 AT1G67000 309 / 3e-94 Protein kinase superfamily protein (.1) Potri.010G118300 [exp] 122 / 9e-33 AT1G66920 316 / 1e-99 Protein kinase superfamily protein (.1.2) Potri.015G018000 [exp] 112 / 5e-29 AT1G66920 355 / 2e-114 Protein kinase superfamily protein (.1.2) Potri.012G003200 [exp] 103 / 1e-27 AT1G66920 280 / 2e-90 Protein kinase superfamily protein (.1.2) Potri.015G018200 [exp] 106 / 4e-27 AT1G66920 368 / 1e-119 Protein kinase superfamily protein (.1.2) Potri.007G125100 [exp] 105 / 4e-27 AT1G66920 347 / 2e-113 Protein kinase superfamily protein (.1.2) Potri.012G002800 [exp] 104 / 2e-26 AT1G66920 346 / 2e-111 Protein kinase superfamily protein (.1.2) Potri.012G003500 [exp] 104 / 2e-26 AT1G66920 358 / 4e-116 Protein kinase superfamily protein (.1.2) Potri.012G003000 [exp] 104 / 2e-26 AT1G66920 356 / 5e-115 Protein kinase superfamily protein (.1.2) Potri.017G035500 [exp] 103 / 2e-26 AT1G66920 336 / 2e-107 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10028669 pacid=23164505 polypeptide=Lus10028669 locus=Lus10028669.g ID=Lus10028669.BGIv1.0 annot-version=v1.0 ATGGAGAAAGACGGGCTAAAAAATTGTTTCAGTTTACAAAAATTCAAATATATCCTTGACGGATTAATTGATAAATGTCTGCTTCTTCCGGTTAGCTGGG AGCAACTCAATCGGATCGCGATAGGGACGGCTCGAGCCATCTGCCATCTGCACGATGTCTCGTCGGTTCTTCATCTAGATATCAATCCTCGAAATGTCTT GCTGGACATTGATTTCACTAAGAAAGTTGCAGATTTTGGCCTAGCCAAGTTGTGTAGTCGCGATCGCCTCTCCGGACGGTACATTGCACCGGAAGTGTTC TCGGTTGACATCGAGGCCGTTTTGAGCAAATCAGCCTTCTACAGCTTCAGAATCCTGTTGTTAGGAATGGTCAAATCGAAGAGCAAGTGCTCTTCGGAGG TCCTCTTTCCGATGTGGGTTCACGACCATCTGAGCAATGGGGGAGGCTTGAAGCTGGAGAATGTGACGGAAATCGATTGGATATCTCATATTTGA
AA sequence Show only first row Show all	>Lus10028669 pacid=23164505 polypeptide=Lus10028669 locus=Lus10028669.g ID=Lus10028669.BGIv1.0 annot-version=v1.0 MEKDGLKNCFSLQKFKYILDGLIDKCLLLPVSWEQLNRIAIGTARAICHLHDVSSVLHLDINPRNVLLDIDFTKKVADFGLAKLCSRDRLSGRYIAPEVF SVDIEAVLSKSAFYSFRILLLGMVKSKSKCSSEVLFPMWVHDHLSNGGGLKLENVTEIDWISHI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38260			Protein kinase superfamily pro...		Lus10028669 [exp]	0	1
AT5G46850			unknown protein		Lus10030954 [exp]	8.8	0.7534
AT4G15620			Uncharacterised protein family...		Lus10041528 [exp]	11.2	0.8536
AT4G37810			unknown protein		Lus10007240 [exp]	14.8	0.8419
AT1G13290	C2H2ZnF	WIP6, DOT5	WIP domain protein 6, DEFECTIV...		Lus10021700 [exp]	16.2	0.8303
AT3G47570			Leucine-rich repeat protein ki...		Lus10037311 [exp]	16.2	0.8294
AT2G40435			unknown protein		Lus10017415 [exp]	29.7	0.8047
AT3G09870			SAUR-like auxin-responsive pro...		Lus10030263 [exp]	30.9	0.8253
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Lus10029562 [exp]	31.1	0.8138
AT2G38140		PSRP4	plastid-specific ribosomal pro...		Lus10004829 [exp]	36.9	0.8236
AT5G62360			Plant invertase/pectin methyle...		Lus10031138 [exp]	37.1	0.8243

Compare expression of checked genes

Lus10028669 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.