Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17970 249 / 4e-81 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT4G36090 243 / 1e-78 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.2), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.3) AT1G48980 239 / 2e-78 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein AT2G48080 89 / 3e-20 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) AT4G02940 81 / 2e-17 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) AT1G14710 81 / 3e-17 hydroxyproline-rich glycoprotein family protein (.1.2) AT1G20570 79 / 7e-17 Spc97 / Spc98 family of spindle pole body (SBP) component (.1) AT1G80260 77 / 3e-16 EMB1427 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028462 [exp] 262 / 3e-85 AT2G17970 542 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10041917 [exp] 258 / 1e-83 AT2G17970 549 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10018892 [exp] 127 / 2e-33 AT1G80260 919 / 0.0 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Lus10028588 [exp] 127 / 4e-33 AT1G80260 942 / 0.0 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Lus10029637 [exp] 85 / 1e-18 AT4G02940 503 / 4e-174 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10008166 [exp] 83 / 4e-18 AT4G02940 511 / 2e-177 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10027990 [exp] 83 / 4e-18 AT4G02940 535 / 0.0 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10042669 [exp] 80 / 5e-17 AT4G02940 498 / 5e-172 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G114800 [exp] 251 / 6e-81 AT2G17970 504 / 1e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Potri.007G012200 [exp] 235 / 9e-75 AT2G17970 458 / 2e-157 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Potri.010G102100 [exp] 96 / 2e-22 AT1G14710 421 / 3e-139 hydroxyproline-rich glycoprotein family protein (.1.2) Potri.008G138900 [exp] 91 / 1e-20 AT1G14710 423 / 6e-140 hydroxyproline-rich glycoprotein family protein (.1.2) Potri.016G000100 [exp] 62 / 8e-11 AT1G80260 431 / 3e-137 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Potri.014G137700 [exp] 61 / 1e-10 AT4G02940 542 / 0.0 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Potri.014G184801 [exp] 42 / 0.0001 AT1G80260 321 / 8e-103 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0540 [flax] [poplar] GCP PF04130 [flax] [poplar] GCP_C_terminal Gamma tubulin complex component C-terminal
Representative CDS sequence Show only first row Show all	>Lus10028670 pacid=23164639 polypeptide=Lus10028670 locus=Lus10028670.g ID=Lus10028670.BGIv1.0 annot-version=v1.0 ATGGTGGATCGTATACCTCACCTTTTCAAGGTGATGATAATGAGGCTCATTAGATGGCATGTTCTGCCTCCGACATGCGTACCAGACAGCTGTATCGTCA ACATCTACGAGGAAGGGGATTGCATTCCACCCCACATCGACCACCATGATTTTCTCCGACCATTCTGTACGGTATCCTTTGTTAGCCAGTGCAATATAGT ATTTGGGACCGACATAAAGGGTACGACCCCCGGTGAGTTCTCCGGATCATTGGCAATTCCTTTACCAGTTGGCTCTGTGCTTGTACTGAATGGAAATGGA GCTGATGTAGCTAAACATTGTGTGCCGTCAGTCCCAACAAAGAGGATATCGATCACTTTCCGAAAGATGGATCCCGCAAAACGGCCTCGTGGTTTTGTTC CAGAGCCTGATCTGAAGGGACTTGAGCCAGGGAAGGATAGTAGTGATGAAGATTTGAAAGATGCCCCTGCTGATGATTTTGCTTTTGCTATGTTGATTCG GGAATCCATTAGGAACTCTGCAGATTCATTAGTTGTCACCATTACAAAAAGTAAAGGTTTGGATGGTGATGAGCGTACCTCAACTTGTAGAAGTAATCCT CACAACTCCGTACTTGACGCCCTTGCTTCATTGAACTTCACTTACAAGGTTTCGTGGCCATTGGAACTGATTGCGAACGCAGAAGTCATCAAGAAGTACA ACCAGGTACACTCCCACTAG
AA sequence Show only first row Show all	>Lus10028670 pacid=23164639 polypeptide=Lus10028670 locus=Lus10028670.g ID=Lus10028670.BGIv1.0 annot-version=v1.0 MVDRIPHLFKVMIMRLIRWHVLPPTCVPDSCIVNIYEEGDCIPPHIDHHDFLRPFCTVSFVSQCNIVFGTDIKGTTPGEFSGSLAIPLPVGSVLVLNGNG ADVAKHCVPSVPTKRISITFRKMDPAKRPRGFVPEPDLKGLEPGKDSSDEDLKDAPADDFAFAMLIRESIRNSADSLVVTITKSKGLDGDERTSTCRSNP HNSVLDALASLNFTYKVSWPLELIANAEVIKKYNQVHSH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Lus10028670 [exp]	0	1
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Lus10026680 [exp]	9.1	0.9000
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10039736 [exp]	13.3	0.8979
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10009455 [exp]	15.9	0.8953
AT3G63480			ATP binding microtubule motor ...		Lus10035344 [exp]	15.9	0.8899
AT4G31380		FLP1	FPF1-like protein 1 (.1)		Lus10040802 [exp]	16.2	0.8842
					Lus10006724 [exp]	18.2	0.8959
AT2G26520			unknown protein		Lus10021765 [exp]	19.9	0.8947
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10039650 [exp]	20.8	0.8834
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10040333 [exp]	29.0	0.8852
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Lus10041924 [exp]	38.9	0.8821

Compare expression of checked genes

Lus10028670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.