Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17970 66 / 3e-11 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT4G36090 65 / 7e-11 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.2), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.3) AT1G48980 59 / 1e-09 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000969 [exp] 371 / 2e-112 AT1G21580 568 / 4e-167 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10028660 [exp] 229 / 5e-64 AT1G21580 583 / 5e-172 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10041917 [exp] 71 / 9e-13 AT2G17970 549 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10028672 [exp] 69 / 3e-12 AT2G20410 309 / 1e-103 RNA-binding ASCH domain protein (.1) Lus10000855 [exp] 65 / 3e-12 AT2G20410 55 / 2e-09 RNA-binding ASCH domain protein (.1) Lus10028462 [exp] 69 / 4e-12 AT2G17970 542 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G114800 [exp] 64 / 2e-10 AT2G17970 504 / 1e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Potri.002G077700 [exp] 58 / 3e-08 AT1G21580 608 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.007G012200 [exp] 54 / 3e-07 AT2G17970 458 / 2e-157 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Potri.005G182900 [exp] 54 / 5e-07 AT1G21580 607 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028671 pacid=23164461 polypeptide=Lus10028671 locus=Lus10028671.g ID=Lus10028671.BGIv1.0 annot-version=v1.0 ATGGATCCTCGATGGTCTTACTACCCTCCTCCGCCGCTTCCGCCGCTACCTCCGCCGCTTCCGCCGCTACCTCCGCCGCAGCACGGCTACCCTAACTTCT GCAGTCTCCCGCCACTGCCTTCATATCCGCCTCCTCCGCTTCCAACACTACCTCCGCCACCGCACGGCTACTCTAACCTCTACAATCTCTCGTCACTGCA TTCCTATCCGGCTCCTCCTCTCAATCTGCATTTCCACGTCCACCAACTCGCCTTCAGCAACCCTAATCATTACCCTGTCCGTCAATATTACTATCCCTGG TTGCAACCTGAATATCCTGGTTTCAATCCTGTCCGATTGCCGGAGTTCCGTTACAGAGGTTTGCCTGGGGTTTTAGAAGATGGTCGGCGTAGAGGAGGGG AGTATCCTGTTGCTAATTTGGAGCATGAGGCGTTCCGTCAAGAGGTAGATATGCTTTCTATGACTCCTGTTGTTAGGACTAGAAGTGAATTGGATGTGAA TTCTAGGCTCTTAGGGGATGTTAATAGGAGGAATGAGTACAGTACTAGAGAAGGAGGTTTCCTGGACCAAGATACTGTTGGAATTCATCGTGGTCGTGAT AACATGGATTCTTTGCATCATGATTCGAGTTCACGAGGTTCTGATTCGAATCCGGTGGATCATGAGAGACGTTCTGATTCGATTTCTGATCATGTGAGAG TAGTAATGACAGATGTGCTTAACTCTGCGGTTGAAAAGGGGAATAGGGAATTCAGGGATTATGATCAGTCTCGAAGAGGCTATAACCGCAGAGAAGCAAA TGCACGCTTGGAACGGGATGATGGCAATGGGAATAGAAAGACCAGCAAGAGATCAAGAGGAGACAGTTACGATCAGTATCAAAGAGGCTATAACAGCAGA GAACCAAATGCACGCTTGGAGCAGGATAATGACAATTGGAGTAGAGAGACTAGCAAGGGATCAAGAGAAGATAGTTACGATCAGTATCGAAGAGGCTATA ATGACAGAGAATCAAATGCACGCTTGGAACGAGATGATGACAATGGGAGTAGACAGACTAGCATGGGATCAAGAGAAGATAGTCGTCACACACCGAAGAA AAAGAAGAGTTCATCTCGTAGGATTCAGAAGCCGATAATCAACAATAAGGAGGATCAGAAGACGCATCACTTCGGTTACTATGATAAACCTAGCGGAAGA GGTAAAGATCAGAATTCTTATCCAGGACGAGGCACAAAAGATAAAGCTGGAGGTGGAATTCCTGTTAGGTTGGATGTGTCATTCGAATCTAACTCACCTG TGGCCTCTGCGAGATCTTCTGATGCAGGTTTGAATCGTAGGAGTAGTAAAGTTAGGAAACTGGACAATTCTGAGAAATATAGTTTGAACCCCCAGGCGAT GAAGCCAAAAGGGCTTGCTACCAGATTGAAGTCTGTAGTTGTGAAAGATGTGTCTGAAGGGAAGGTTACTGTTTCTACTGCTTTTAGGAGTCTTGACTCT AGTTCAGTGCTTGGCATTGGTGTGACATCTAAAGAGCCAATAGTGGATGGTTCTGGGGTTGAGATGGAGCTCGGGGAAAGCGATAGAGATGAAAAGGTGG ACGAACATAAGCTGGATAAGGGTAGTTTGTCGTGGGAGACAAGAGACCGTTTACGGTTTCACAAAGTGAAGCGGAAGAAGGATTTCACATTCGTAGAGTG GATTCGCGAGAATAGGGTGAACGTCATGGAGGGAATCGAACTTCACTGCGGTATCTTCAGTCTCGCGGAGCAGGAGAGGATCGTTGCTACAGTTCTCGAG CTTCAAGAGATGGGCAAGAAAGGAAAGTTGAAAGGTAAAAGCTCCCAGCCTTAG
AA sequence Show only first row Show all	>Lus10028671 pacid=23164461 polypeptide=Lus10028671 locus=Lus10028671.g ID=Lus10028671.BGIv1.0 annot-version=v1.0 MDPRWSYYPPPPLPPLPPPLPPLPPPQHGYPNFCSLPPLPSYPPPPLPTLPPPPHGYSNLYNLSSLHSYPAPPLNLHFHVHQLAFSNPNHYPVRQYYYPW LQPEYPGFNPVRLPEFRYRGLPGVLEDGRRRGGEYPVANLEHEAFRQEVDMLSMTPVVRTRSELDVNSRLLGDVNRRNEYSTREGGFLDQDTVGIHRGRD NMDSLHHDSSSRGSDSNPVDHERRSDSISDHVRVVMTDVLNSAVEKGNREFRDYDQSRRGYNRREANARLERDDGNGNRKTSKRSRGDSYDQYQRGYNSR EPNARLEQDNDNWSRETSKGSREDSYDQYRRGYNDRESNARLERDDDNGSRQTSMGSREDSRHTPKKKKSSSRRIQKPIINNKEDQKTHHFGYYDKPSGR GKDQNSYPGRGTKDKAGGGIPVRLDVSFESNSPVASARSSDAGLNRRSSKVRKLDNSEKYSLNPQAMKPKGLATRLKSVVVKDVSEGKVTVSTAFRSLDS SSVLGIGVTSKEPIVDGSGVEMELGESDRDEKVDEHKLDKGSLSWETRDRLRFHKVKRKKDFTFVEWIRENRVNVMEGIELHCGIFSLAEQERIVATVLE LQEMGKKGKLKGKSSQP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36090			oxidoreductase, 2OG-Fe(II) oxy...		Lus10028671 [exp]	0	1
AT1G67040			unknown protein		Lus10017607 [exp]	9.2	0.8720
AT3G22790			Kinase interacting (KIP1-like)...		Lus10039359 [exp]	11.8	0.8506
AT2G36490		DML1, ROS1	REPRESSOR OF SILENCING1, demet...		Lus10035576 [exp]	17.5	0.8594
AT5G43810		PNH, ZLL, AGO10	ZWILLE, PINHEAD, ARGONAUTE 10,...		Lus10006627 [exp]	18.6	0.8410
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10033736 [exp]	18.7	0.8625
AT1G67040			unknown protein		Lus10033565 [exp]	20.0	0.8709
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Lus10013125 [exp]	23.3	0.8579
AT1G77270			unknown protein		Lus10029729 [exp]	25.5	0.8562
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10011730 [exp]	35.6	0.8521
AT1G02065	SBP	SPL8	squamosa promoter binding prot...		Lus10028181 [exp]	37.5	0.8460

Compare expression of checked genes

Lus10028671 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.