Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20410 306 / 2e-102 RNA-binding ASCH domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006580 [exp] 458 / 1e-162 AT2G20410 327 / 2e-111 RNA-binding ASCH domain protein (.1) Lus10014656 [exp] 426 / 3e-146 AT2G20410 295 / 1e-95 RNA-binding ASCH domain protein (.1) Lus10042558 [exp] 333 / 3e-114 AT2G20410 306 / 4e-104 RNA-binding ASCH domain protein (.1) Lus10022016 [exp] 326 / 2e-111 AT2G20410 285 / 4e-96 RNA-binding ASCH domain protein (.1) Lus10000855 [exp] 180 / 6e-56 AT2G20410 55 / 2e-09 RNA-binding ASCH domain protein (.1) Lus10000969 [exp] 90 / 4e-19 AT1G21580 568 / 4e-167 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10028660 [exp] 89 / 6e-19 AT1G21580 583 / 5e-172 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10028671 [exp] 71 / 7e-13 AT4G36090 75 / 5e-14 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.2), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G017900 [exp] 328 / 2e-111 AT2G20410 288 / 2e-96 RNA-binding ASCH domain protein (.1) Potri.013G045800 [exp] 318 / 9e-109 AT2G20410 281 / 3e-95 RNA-binding ASCH domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [flax] [poplar] PUA PF04266 [flax] [poplar] ASCH ASCH domain
Representative CDS sequence Show only first row Show all	>Lus10028672 pacid=23164519 polypeptide=Lus10028672 locus=Lus10028672.g ID=Lus10028672.BGIv1.0 annot-version=v1.0 ATGAATCACTCTGGGTACTATGATTCTGATGACAAACCTAGAGGAAGAGGTAAAGAGAATTCTTATTCAGGACGAGGCACAAAAGATCATGTTGGAAGTG GAATTCCTGTTGTTACACCTCTGCCAGCCTCAGTGAGTTCGTCTGATGGAGGTTTGAATCCTGGGAAGAGTAAAGTTAGGAAACTGGAAATTTCTGATCA GAAGGATAGTTTGAGCCCCCAGCCGATGAACATCAACCCCTGCTTGACTATGCACCAACCTTGGGCTTCTCTGCTCGTCCACGGCATTAAACGGATCGAA GGTCGATCCTGGCCGGCTCCCATTCGCGGGCGGTTGTGGATTCATGCTGCAAGTAAAGTTCCAGAGGAAGAGACAATCAAGGCAATGGAGGATTTCTACA GGGAAATCTATGCGTTGAATGGCGTTACTGACATTAAGTTTCCTGAACGCTATCCTGTTTCCAGCCTCTTAGGCTGCATTGAAGTAGTTGGATGTCTGAA GCTTGACGAAGTAGCAAATTGGGAGGCAATACCGGAAGGGGTGAGGGTAGAGGGACACACTGATTTTTGTTGGCTTTGTGAATCGCCACAGAAATTGCGT ATACCATTTGTGATGAGAGGCAATCAAGGTGTATATAACTTGGAAAAGAAGATATTTGAGTCTGCACTTAGACGTCTCTTCCCAGTTAAAGGGCCAATGC CAGTGAAGTTTCCCCTTCCGAGTCAGCAAGATCTCTTTTCGTTGTGCCCTGGTTCTATCAGCTCTCAGACCAGATCGAATCCATCCAAAGTGGAGAAGTC GCCGAGTCTTATTGCAGCTATTGAGTCTGCTCGTGCAGCAGCTACACAGTTCAGCAAAAAAAACCAGAATCATAACTCTAGTGCCATCCAAAATTCGAGC TCAACTAGACAATACAAATTCAGAAGCAAGTCGTCTTCTGAACAGATCGAGATTCCAGCGATGAATTCTCCTTATGTTTGTGACGAGAAGGAAGAGCCGA AAATGTCAAATGAGTCGAACCAGATTGAGCTCGAAGAGAGTAGCAGCCGTCGGATCAGATCCCAAGCAGGTTCGGATAAGCGTCCTAGAGTTTCATCAAA GGTAGTGCATGAACTATGA
AA sequence Show only first row Show all	>Lus10028672 pacid=23164519 polypeptide=Lus10028672 locus=Lus10028672.g ID=Lus10028672.BGIv1.0 annot-version=v1.0 MNHSGYYDSDDKPRGRGKENSYSGRGTKDHVGSGIPVVTPLPASVSSSDGGLNPGKSKVRKLEISDQKDSLSPQPMNINPCLTMHQPWASLLVHGIKRIE GRSWPAPIRGRLWIHAASKVPEEETIKAMEDFYREIYALNGVTDIKFPERYPVSSLLGCIEVVGCLKLDEVANWEAIPEGVRVEGHTDFCWLCESPQKLR IPFVMRGNQGVYNLEKKIFESALRRLFPVKGPMPVKFPLPSQQDLFSLCPGSISSQTRSNPSKVEKSPSLIAAIESARAAATQFSKKNQNHNSSAIQNSS STRQYKFRSKSSSEQIEIPAMNSPYVCDEKEEPKMSNESNQIELEESSSRRIRSQAGSDKRPRVSSKVVHEL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20410			RNA-binding ASCH domain protei...		Lus10028672 [exp]	0	1
AT1G77310			unknown protein		Lus10028666 [exp]	1.4	0.7920
AT1G77320		MEI1	meiosis defective 1, transcrip...		Lus10028668 [exp]	2.0	0.7165
AT1G76280			Tetratricopeptide repeat (TPR)...		Lus10001597 [exp]	6.2	0.6388
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Lus10032541 [exp]	21.0	0.5845
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10036924 [exp]	24.9	0.6025
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10022746 [exp]	82.4	0.5427
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Lus10028677 [exp]	87.8	0.5403
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Lus10006817 [exp]	90.1	0.4985
AT1G52950			Nucleic acid-binding, OB-fold-...		Lus10003298 [exp]	116.3	0.5319
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10034514 [exp]	117.0	0.5215

Compare expression of checked genes

Lus10028672 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.