Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77320 209 / 6e-63 MEI1 meiosis defective 1, transcription coactivators (.1.2) AT3G43930 46 / 5e-06 BRCT domain-containing DNA repair protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028677 [exp] 292 / 8e-92 AT1G21640 1112 / 0.0 NAD kinase 2 (.1.2) Lus10000854 [exp] 256 / 5e-80 AT1G77320 796 / 0.0 meiosis defective 1, transcription coactivators (.1.2) Lus10028668 [exp] 0 / 1 AT1G77320 139 / 3e-38 meiosis defective 1, transcription coactivators (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G182500 [exp] 248 / 4e-77 AT1G77320 1011 / 0.0 meiosis defective 1, transcription coactivators (.1.2) Potri.006G218800 [exp] 47 / 2e-06 AT2G26270 522 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0459 [flax] [poplar] BRCT-like PF00533 [flax] [poplar] BRCT BRCA1 C Terminus (BRCT) domain
Representative CDS sequence Show only first row Show all	>Lus10028674 pacid=23164569 polypeptide=Lus10028674 locus=Lus10028674.g ID=Lus10028674.BGIv1.0 annot-version=v1.0 ATGCAATCTGCTAGGTATCCTGCTGGCGGCAGTGTGTTAGGTCCGCAGTGTGTTCTTTCATGTGCCAAAGAACACAAACAATTCCCTAAGCAAAGTTTCA CGTGTTGCCTTGCGATGGATGGTGTTAAGGTACTAGCATCAGGCTTCGATATGGATGAGAAGGGTAAGCTTGAAAAGTTGGTTAAAGCGATGGGAGGACT TCTCTGTTCTAAGCCAACTTTGGATGTTAGTTTTGTAATCGTGAAGGATGTATTAGCTGCCAAGTACAAGTGGGCTTTGGATATTCTGAAGAAACCAATT CTCACTGCGAGTTGGCTGTACCAGTGCTCGATTGAGCACCGTGTTGTTCCCCACGAGTCATATAGGGTTCTTCCTTTTTCCGGATTGACAATATGCGTTA CTGGAATTACAGGAGAAGAGCGGAACAAGATTGAGAAGCTCATCACAGAAAACGGTGGGAAGTATGCCCGTGAGTTGAAGAAGAACTGCACCCATTTGAT CTCCAATATATCCTTTCATTTAAGAATGATGTAA
AA sequence Show only first row Show all	>Lus10028674 pacid=23164569 polypeptide=Lus10028674 locus=Lus10028674.g ID=Lus10028674.BGIv1.0 annot-version=v1.0 MQSARYPAGGSVLGPQCVLSCAKEHKQFPKQSFTCCLAMDGVKVLASGFDMDEKGKLEKLVKAMGGLLCSKPTLDVSFVIVKDVLAAKYKWALDILKKPI LTASWLYQCSIEHRVVPHESYRVLPFSGLTICVTGITGEERNKIEKLITENGGKYARELKKNCTHLISNISFHLRMM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77320		MEI1	meiosis defective 1, transcrip...		Lus10028674 [exp]	0	1
AT3G58470			nucleic acid binding;methyltra...		Lus10016230 [exp]	13.3	0.8532
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Lus10010314 [exp]	15.3	0.8684
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Lus10033095 [exp]	18.0	0.8350
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Lus10013587 [exp]	24.5	0.8555
AT1G58060			RNA helicase family protein (....		Lus10020816 [exp]	26.1	0.8546
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10003433 [exp]	35.9	0.8108
AT2G17930			Phosphatidylinositol 3- and 4-...		Lus10028458 [exp]	36.1	0.8525
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Lus10031042 [exp]	40.6	0.8458
AT5G47690			binding (.1.2.3)		Lus10039082 [exp]	42.0	0.8474
AT1G77800			PHD finger family protein (.1....		Lus10009785 [exp]	50.9	0.8471

Compare expression of checked genes

Lus10028674 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.