Gene [FLAX] | FIBexDB

Lus10028675 [FLAX]

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JGI Phytozome v13

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Symbol

Arabidopsis homologues

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No hit found

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10028664 [exp]	620 / 0	AT5G50260	59 / 6e-09	cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1)
Lus10017530 [exp]	273 / 3e-88	AT5G22660	55 / 8e-08	FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2)
Lus10018543 [exp]	62 / 2e-10	AT1G03510	534 / 0.0	Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10029951 [exp]	51 / 6e-07	AT5G53840	45 / 9e-05	F-box/RNI-like/FBD-like domains-containing protein (.1)
Lus10039819 [exp]	45 / 1e-05	ND	/

Poplar homologues

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No hit found

PFAM info

Representative CDS sequence

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>Lus10028675 pacid=23164614 polypeptide=Lus10028675 locus=Lus10028675.g ID=Lus10028675.BGIv1.0 annot-version=v1.0

ATGATTTATGTTACAGGTTGCAAACTTGGGGAGCTATCAACTTACGTATTCAAAGAGATGATAAACCTTCGAGAACTCTACCTCTTGCGTATGACCATCG

ACGACATCACCCTAAACAGCCTGATTGCGAGTGCTCCTTCTTTAGAGATTTTGAAACTCGAAAGTCTTGAAATCCATCCCAAGAGGCTTCAAATCTGCAA

CCATCCCAAGTTGAAATCGATCCTCTTCGACGGTGTTAGCGTGAAGGAATTCATTCAAATCAAAGGTGCGCGTTCTCTCGAAACCCTAGAGTTCTTATGC

TCGACTGGTGGTGAACCACGTGTTGAGACTTCCACCTCGACGTTTCGACTGCTCAAGATCCAATATCATTCTGGGAGAAAAGCGAGTTTCCTCAACAATC

TGATCTCCGCATCTCCGTGTCTGGAGGAGCTTTACCTGTCTGAGATATCCGAAGTAGACGGACTCAACATCGTAAACCCTAGCGTTCAGCGTGTGACTCT

GCGCCGTTCGAGGCTATATTTTCCATTGCGTGGCAAGAACACGATTCGAATCGATGCCCCCAAGTTGGTTCGGTACGAGTGCCACGAATCTATCGGATGT

CTTCCTTCGTTGAGTTTCGCCACTGGTCTTGAAGCATCAGACTGCTGTGTAGCATACTTGTCAAGCTATGGAGTTGCGATTACACAGGAAGAGTTCATAG

ACGTGAAGTGCTTCCTTGCCAAGTTAAGGCCGCAGTTTCGATTCATCAGAGTCTCCTTGTTCAGCTTCCGTGGTAGGGAGGATGAGTGTACTTTCGACCG

GGATCAGATTCAAGATGGCACGCCTGCTATAGTCATCAATTGGCTCTATTTAAACTCGTACGGCCTCCGAAATTTACCTGGCTTGAAGGCTTTTTTCGAC

GGTCTATTCTGGACTTGTCTTCCTCTGAACTTATCGATAGCTAGAAGTGCTCGTTATGGCAGCAACGATGATTGGTCTAAATGTCTCAAGGTTAGTTGA

AA sequence

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>Lus10028675 pacid=23164614 polypeptide=Lus10028675 locus=Lus10028675.g ID=Lus10028675.BGIv1.0 annot-version=v1.0

MIYVTGCKLGELSTYVFKEMINLRELYLLRMTIDDITLNSLIASAPSLEILKLESLEIHPKRLQICNHPKLKSILFDGVSVKEFIQIKGARSLETLEFLC

STGGEPRVETSTSTFRLLKIQYHSGRKASFLNNLISASPCLEELYLSEISEVDGLNIVNPSVQRVTLRRSRLYFPLRGKNTIRIDAPKLVRYECHESIGC

LPSLSFATGLEASDCCVAYLSSYGVAITQEEFIDVKCFLAKLRPQFRFIRVSLFSFRGREDECTFDRDQIQDGTPAIVINWLYLNSYGLRNLPGLKAFFD

GLFWTCLPLNLSIARSARYGSNDDWSKCLKVS

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67190			F-box/RNI-like superfamily pro...		Lus10028675 [exp]	0	1

Lus10028675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.