Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21610 417 / 3e-136 wound-responsive family protein (.1.2.3) AT1G77310 392 / 3e-126 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000853 [exp] 1129 / 0 AT1G21610 459 / 3e-152 wound-responsive family protein (.1.2.3) Lus10028666 [exp] 542 / 0 AT1G77310 261 / 3e-78 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G182300 [exp] 687 / 0 AT1G21610 449 / 3e-148 wound-responsive family protein (.1.2.3) Potri.002G078800 [exp] 657 / 0 AT1G77310 417 / 4e-135 unknown protein Potri.005G067800 [exp] 369 / 2e-117 AT1G77310 321 / 5e-99 unknown protein Potri.007G101201 [exp] 312 / 6e-96 AT1G21610 286 / 2e-86 wound-responsive family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028676 pacid=23164454 polypeptide=Lus10028676 locus=Lus10028676.g ID=Lus10028676.BGIv1.0 annot-version=v1.0 ATGGCGGAGGAGCGGGGCGGCGGCGGATTAGCAGGAGGAGGGGGAGGGGGAGGAGAGTCGTCGTCTTCGAGGATGACGCCGTCGTACGTGAAATCAGGTG ACCGGCAGTTATTCACGGTGGAGCTCCGACCGGGGGAGACGACATTCGTGTCTTGGAAGAAGCTGATGAAGGATGCCGATAGGAATTGCAGTGGATCTAA GCCGGTTTTGGACCCTCCTCCTCCTGCCAACGCTCACCCCAACCTCGAGTCTCGTATTGCTCCTGGTGGTCAACAGACAGAAAATGAAGAGAAGGATGAT GCTCCTCATCGTTTCAGTGCCGTGATTGAGAAGATTGAACGTCTCTACATGGGGAAGGATAGTAGTGATGATGAAGATTTGAAAGATGCCCCTGATGATG ATCAGTATGATACAGAAGATTCTTTTATTGACGATGCGGAGCTGGATGAGTATTTTGAAGTTGACAATTCCGCCATAAAGCATGATGGGTTCTTTGTCAA CAGGGGAAAACTCGAACGCATAAGTGAGCCTGCTGCCATTCCTGACAAGCAACCAAAGAAAAGGAGGAGGAAAGATTCAACAAAGGCTCATGGTGATAGT GAAAACATTAATGTGTCTAATAAACATGTTAAGATTGGAAGACCAGCTGCTGGAAAGACTGTGCAATCAGTAGCAAAGCATTCTTCCTTGCCTTCTCAGA ATTTGACTATGGAAGTTGATTATTATGAAGATGGGAAGTCTCATAACCCATTGAATTTTTCTGGAACATCTACCAAGAAGATGTCAAATGGTGATGCTTC CGCATCATTAGTAGAAGGGAAAGATTTTCAAATGCAAGAGCCTGGAATTCTCCATGGAAATAACTTCACAAATAAATCTAAACATCAGCTTCATGACAAA AGTGCTTATGGACAAAATAAGCTGCAATCTGTAAGGCCTCTTACTAATGTTGAAGAACCTGAATCATCAACTCGATCGAAAGAAAGAAATGGGGTCAGAA TGCTGCCTGACCTTAATAATGTGCCCGATGGAAAGATATCTGTGCATACAACACAGGCAACACACGTCCACAAAAGGGATGGTTCTAGTGTCAAGCCTAA AGGTTCAATGTTAGAAAAAACCATCAGGGAGCTGGAAAAAATGGTCGCTGAATCAAGGCCACCTGCGATTGACAATCAAGAAGCTGATCCACCACAAGAA CTTAAAGGAAGACTGCCTAGGGAAATCAAGCTGAAGCTAGCCAAAGTTGCTAGACTCGCGGCAAGCCAGGGGAAAATGTCAAAGGATCTAATCAATCGCC TTATGAGTTCCCTGGGGCACTTAATACAACTCAGAACACTGAAGAGAAACTTGAGAATCATGGTAAACACTGGTTTGTCAGCACAGCAGGAGAAAGATGA TAGTTTCCAGAAGATAAAAAAGGAAGTTGGTGAGATGATCAAGACTCGTGTCCCATCATTGGAGTCGAAGGCTTTAGAGCAGCAAGCTGGAGCGCCTGAT GGTTACCAAGAACTTGATCCAGAGAACAAATCGGCAAAACGCAAATTTAGTATGGAAGCTGAGTTGGAGGACAAGATTTGCGACCTTTATGACCTTTTTG TTGATGGACTGGATGAAGATGCAGGTCCACATGTCAGAAAGTTATATGTCGAGCTTGCAGGACTGTGGCCAATTGGCACCATGGACAACCATGGGATCAA AAGAGCAATATGCAGGGCAAAAGATCGACGAAGGGCTCTGTACAGCAAAAATAAGGAGGACGAGAAAATCCGAAGGAAGAAAATACTGTCATCATCAAAG CCAGAAGAAGCTATCCTAGCTGATCCCGCCTCCTCTTCGCAGCATTTCCGTGAAAGAATAACTAGCGACACAACTGGTCCCGTATTGGCCTTAGCTAGCG TGCCGATATCCAGTCCAACCACAATCCCCCAGGGATCCAGTATCCCGCCGAAAGGAAGTTCCGGCATTTTCATCCAAGAGGTAAAGACAGAAGGAGATGT CGTTCTGGTCAAGAAGAAGGCGAAGAAGAGAAAGCCCGAAGCAGCCGAACTAGACCAAGCACATTTCCGCTCGCAATCGAGCGAGGAGAGGTACAAGTTG GTCATTCCCCAGAAACTACACCTTCACCAAACCGGCAGTTTCGAGCAACCCAGCTGA
AA sequence Show only first row Show all	>Lus10028676 pacid=23164454 polypeptide=Lus10028676 locus=Lus10028676.g ID=Lus10028676.BGIv1.0 annot-version=v1.0 MAEERGGGGLAGGGGGGGESSSSRMTPSYVKSGDRQLFTVELRPGETTFVSWKKLMKDADRNCSGSKPVLDPPPPANAHPNLESRIAPGGQQTENEEKDD APHRFSAVIEKIERLYMGKDSSDDEDLKDAPDDDQYDTEDSFIDDAELDEYFEVDNSAIKHDGFFVNRGKLERISEPAAIPDKQPKKRRRKDSTKAHGDS ENINVSNKHVKIGRPAAGKTVQSVAKHSSLPSQNLTMEVDYYEDGKSHNPLNFSGTSTKKMSNGDASASLVEGKDFQMQEPGILHGNNFTNKSKHQLHDK SAYGQNKLQSVRPLTNVEEPESSTRSKERNGVRMLPDLNNVPDGKISVHTTQATHVHKRDGSSVKPKGSMLEKTIRELEKMVAESRPPAIDNQEADPPQE LKGRLPREIKLKLAKVARLAASQGKMSKDLINRLMSSLGHLIQLRTLKRNLRIMVNTGLSAQQEKDDSFQKIKKEVGEMIKTRVPSLESKALEQQAGAPD GYQELDPENKSAKRKFSMEAELEDKICDLYDLFVDGLDEDAGPHVRKLYVELAGLWPIGTMDNHGIKRAICRAKDRRRALYSKNKEDEKIRRKKILSSSK PEEAILADPASSSQHFRERITSDTTGPVLALASVPISSPTTIPQGSSIPPKGSSGIFIQEVKTEGDVVLVKKKAKKRKPEAAELDQAHFRSQSSEERYKL VIPQKLHLHQTGSFEQPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21610			wound-responsive family protei...		Lus10028676 [exp]	0	1
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Lus10015446 [exp]	3.6	0.8966
AT3G51120			DNA binding;zinc ion binding;n...		Lus10014271 [exp]	4.0	0.8848
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Lus10042734 [exp]	4.6	0.8935
AT3G10650		AtNUP1	unknown protein		Lus10043447 [exp]	6.0	0.8936
AT5G01400		ESP4	ENHANCED SILENCING PHENOTYPE 4...		Lus10005032 [exp]	7.5	0.8897
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Lus10027289 [exp]	8.1	0.8656
AT3G51120			DNA binding;zinc ion binding;n...		Lus10025973 [exp]	9.8	0.8641
AT3G10650		AtNUP1	unknown protein		Lus10028861 [exp]	9.9	0.8625
AT5G42950			GYF domain-containing protein ...		Lus10012078 [exp]	11.0	0.8892
AT3G26990			ENTH/VHS family protein (.1)		Lus10005665 [exp]	11.8	0.8355

Compare expression of checked genes

Lus10028676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.