Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21640 1053 / 0 ATNADK2, NADK2, ATNADK-2 NAD kinase 2 (.1.2) AT1G77320 451 / 2e-136 MEI1 meiosis defective 1, transcription coactivators (.1.2) AT3G21070 219 / 6e-61 NADK1, ATNADK-1 NAD kinase 1 (.1.2) AT1G67180 53 / 2e-06 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1) AT4G02110 53 / 3e-06 transcription coactivators (.1) AT1G80420 48 / 5e-05 ATXRCC1 BRCT domain-containing DNA repair protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000856 [exp] 1676 / 0 AT1G21640 1205 / 0.0 NAD kinase 2 (.1.2) Lus10000854 [exp] 1576 / 0 AT1G77320 796 / 0.0 meiosis defective 1, transcription coactivators (.1.2) Lus10029717 [exp] 1271 / 0 AT1G21640 1154 / 0.0 NAD kinase 2 (.1.2) Lus10028674 [exp] 293 / 5e-91 AT1G77320 209 / 6e-63 meiosis defective 1, transcription coactivators (.1.2) Lus10003178 [exp] 222 / 2e-61 AT3G21070 768 / 0.0 NAD kinase 1 (.1.2) Lus10028668 [exp] 195 / 1e-56 AT1G77320 139 / 3e-38 meiosis defective 1, transcription coactivators (.1.2) Lus10009958 [exp] 190 / 3e-51 AT3G21070 700 / 0.0 NAD kinase 1 (.1.2) Lus10034088 [exp] 54 / 1e-06 AT1G67180 250 / 2e-76 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G078700 [exp] 1168 / 0 AT1G21640 1191 / 0.0 NAD kinase 2 (.1.2) Potri.005G182600 [exp] 1124 / 0 AT1G21640 699 / 0.0 NAD kinase 2 (.1.2) Potri.005G182500 [exp] 639 / 0 AT1G77320 1011 / 0.0 meiosis defective 1, transcription coactivators (.1.2) Potri.001G256100 [exp] 221 / 1e-61 AT3G21070 774 / 0.0 NAD kinase 1 (.1.2) Potri.009G051500 [exp] 218 / 5e-60 AT3G21070 754 / 0.0 NAD kinase 1 (.1.2) Potri.014G122400 [exp] 52 / 5e-06 AT4G02110 382 / 4e-112 transcription coactivators (.1) Potri.002G197400 [exp] 51 / 8e-06 AT4G02110 374 / 6e-110 transcription coactivators (.1) Potri.004G106000 [exp] 49 / 4e-05 AT1G67180 237 / 3e-72 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0459 [flax] [poplar] BRCT-like PF00533 [flax] [poplar] BRCT BRCA1 C Terminus (BRCT) domain CL0240 [flax] [poplar] PFK PF01513 [flax] [poplar] NAD_kinase ATP-NAD kinase
Representative CDS sequence Show only first row Show all	>Lus10028677 pacid=23164567 polypeptide=Lus10028677 locus=Lus10028677.g ID=Lus10028677.BGIv1.0 annot-version=v1.0 ATGATGAAGACGAACACGTTCAAAGGCACCAATGTGTTCATGTCCAGGAAACTCGTCCCGCCGGAGATCTACGACGCACTGCTCGACGCACTCAAGCTCA ATGGCGCCGAAGTCTTCCCGTGCTCCGACCCTTCCCGCAACTCTCTCAACGATTACCACGTCATCTCGTCTCCCGATCACGAGAAGTTTGAGGATCTTAG AGCTAAGGGATGTAATCTGCTAGGTCCGCAGTGTGTTCTTTCATGTGCCAAAGAACACAAACAATTCCCTAAGCAAAGTTTCACGTGTTGCCTTGCGATG GATGGTGTTAAGGTACTAGCATCAGGCTTCGATATGGATGAGAAGGGTAAGCTTGAAAAGTTGGTTAAAGCGATGGGAGGACTTCTCTGTTCTAAGCCAA CTTTGGATGTTAGTTTTGTAATCGTGAAGGATGTATTAGCTGCCAAGTACAAGTGGGCTTTGGATATTCTGAAGAAACCAATTCTCACTGCGAGTTGGCT GTACCAGTGCTCGATTGAGCACCGTGTTGTTCCCCACGAGTCATATAGGGTTCTTCCTTTTTCCGGATTGACAATATGCGTTACTGGAATTACAGGAGAA GAGCGGAACAAGATTGAGAAGCTCATCACAGAAAACGTATCTGGGCAACCATCAGCAGCTGTAGAATCAAGCTCGGCTACTTCTTGTCAATCTACTGGTT TAGCTGATTCGGATGTAGAAGCAACTCTCTCGCAGAACATGTCTTCTATGTTTTATGATGCTTCCATGTACATGAAAAAGGACGACAATGAGGCTCCTGC ACCACAGCCAACAAATGAAACAAGCTTTAGCAATTGTGTTGCTAATGATTCTCAATCTGAAGACAATGATTTGTACTTGGCTGACTGTAGGATATCACTT ATTGGTTTTGGAGCTTCTGAATTACGCAAATTAGTTAACATGGTGCGTAACGGCGGGGGGGGCTGGGAGATCGTACCGGGGGGTCCCGGTACATGCGAGA AAAAAGAACTAAGGAGCCTTGCTGCTTCGGGTGTCATTAATGTGGTTAGCACAACATGGCTTGAAGATTGTGATCGAGAAAAGAGAGAAATTCCCGTTCG AGCCCAACATATGGCATACGATTTACTTCGTCCAAAAGACTCTTTGAACTTCAAGAAAGGACCCCTCAACGGCATAAGGAAATCTTCTATTCCTGGTGTA CCTTCTGATCAGTTGAATGTAGAATCTGGCAGGCCAGAGGTACATTCTCATCAGTTAATGGGACGTTTAGATCCTCTCAGGACAGCAGGATTCCCAATTG AGCAGAAAAAAGAGGAAAAACAAGAAAACCATGTTGATGGAGTACTGAATCCAAATGCAACCTCGACACAGATTCAGAAAAATTCATTTCCCTTTGATAA CATTCAAAAGAAGGATGGACAGAGTATACATCATGGTTCTGATGACGCAAAGTCTCAAAGCCGGAAACCGGCAGCTGTATTTATGGGAAAAACCTTCTGC TTTTCTATGGCGTTTCCTGCTGACAGGAGAACTGAGATTGTCGAGTGGATCGCCCAAGGTGGTGGAGAATTAATTGACGATGGAACTATACAGAATGTGC AATTCACAGTTGAATGCCATGGTGTCATTACCTCTTCTTCAACCCATACTTGTTTTGTTTCTAGTCACTGGGTTCGGTCTTGTTTAGAGGATAGAAAATT GCTGGACGTCAGCAGTCATATTCTGTATTCACCACTTCCCTGCCAGATTCCTTTTCTTGGGTTTGGAACCTTTCGGTTCTGCGTATCCCAATATGATGAC AAAGAGAAGTCGTTGTTAAGAAACTTGTGCTTTGTTCTTGGAGCCAAATTCGTAGAGAAGTTGACGAAGAAGGTTACTCACTTACTCTGCAAGTTTAGGC ATGGACCTAAGTATGATTTTTCTTGCAAATGGGGGATAACCGCAGTTACATCGGAGTGGATCTATGCGTGCGTTAGACAGGATAAAGTTGTTGATTTTGC TCCATTCAAACCAAAAGAGATGACTCAGCAGGACCAGGAAGATGGCTTATACGCTGTGAGCCAATTCCCTTCTCAATCTGTTTGGAAGGTTCCTGGAGAA CCTTCATCACAGTTGAGAAGCCAGTCCCAAGTCGTCACCAAACCCCAGCTTCCAATTCCTAAGAAAACTATCAGCAGTATGCTAGGTGCCCAAGAATTCA TCCATCCTTCGAAAAGGCCACGAAATGTTCAACCCGGAGACCAAACCAGCCTTCCTTCTTCCGATGTTTATTCAAGCGGCTTCAATATACGCTCCGAAAC TGGCAAGATCAGCAAAGAGTCAACAGATACTTCACATACCGTTCCTGATGTGGCCGCTCTCGAATATTTGTTGGAGCAAACAAGCAAAATTCATGACCAT AGCTCCCCCGTTCAGACCGGTTTGGACAAAAGTCTGTTACCCCCTCCTGAAAGCACAATGCTCGACGAAGACCGTGCTGGAACAGCTTCTGCCACCGGTT TACCGAACGATTGGTTGAACAGTAATGGCAAGAGGAAGGACGAGTCCAACGAATCCTTACAAGACGCGGACAAAGGAATGTACTACGGTTTCAGCGAAAC GCAGACGGAGTCCCAGGTTGTTGGTTACGAAGAGGACCTAACCGGTCGACAAATGCTTATTGATAGGAACCACCCATCCCATACTTTTCAACCCGCTTAC TTACTTGGCAGAAGCTGGAATGCTTCTCCTTCTGCTGCCACGTGTCCGCCTCCGCCGCCAACGCCAAGTATGATGAGCCGATTGTCCTCTCCGGTCGTCG GAGCTTTCATTCTCTCTCCTCCTCCTAACGGGGATGGTTGTTGTAAGTCGACGGTGGAGTTTCAGAGGAGGAGGAAATTTAGGTTCGTTGTTTCAGCGGA GTTTCCCAAGTCATTCTCCCTCGACTTGGGGTTCGATCACTCTCTGAATGAAAATCAGTCTAATGACCAATCACAGTCACCCTGGATCGGTCCAATTCCT GGGGATATTGCTGAAGTCGAGGCGTATTGCAGAATTTTCAGAGCAGCTGAAAGGTTTCATACTGCATTGATGAACACATTGTGCAACCCGGTCACTGGGG AGTGTAGCGTTTCTTATGACTTCCCGCCGGAAGAAAGACCTGTGCTAGAACAGAAAATTGTATCCGTTCTTGGAGCTGTGCTGTCACTTCTTAACAAAGG AAGGAAAGATGTTCTCACTGGACGGTCTTCTGTCATGAGCTCGTTTCGTATCTCGGACGTAAGCATGATGGAGGATAAGCTCCCACCACTTGCGGTTTTC AGGAGTGAGATGAAAAGATGCTGTGAGAGTCTGCATGTTGCTCTTGAGAACTATCTGACACCTGATGATGATCGAAGTCTGGAAGTGTGGAGGAAATTGC AGAGGCTGAAGAATGTCTGCTACGATTCTGGTTTCTCCCGTTCCGACGAATGTCCTTGTCATACGGTTTTGGCAAATTGGAATGCTGTTTATTCATCCTC GTCCAAGGAAGAGATCGAGTCGGAAAGCTCCAAGACAGAATTTTGGATGGGCGGGCAGGTTACAGAGGAGGCCTTGAAGTGGTTGTTGGATAAGGGATTC AAGACTATTGTAGATCTTAGAGCAGAAACCGTACAGGACAACTTTTACAAAGCAGCGATAGATGATGCTATTTTGTGTGGGAAGATGGAACTGATTCAGA TCCCCATTGAAGTTGGCACAGCACCTTCAGTGGAGCAAGTTGAATTGTTTGCATCATTGGTTTCAGATTTCAGCAAAAAGCCGATTTACATTCATAGTAA GGAGGGAGTACAGAGAACTTCTGCAATGGTATCCAGATGGAGGCTGTTCAGGTCTCGTATGCCATCTCAGGATACCAGTGAACAAAAAGAACTACACACA ATTTCTAGTGTGGACAAAGAAACCATTCTAAACCAGGAAAATGGATGTGCTAGACATGCTTCACAGGAACTTCACTCTTCAAATGGGTCATCTCATGGTG AAGTTGACTCTTCAGTTAAATTTGGGAAAGCCCCGGGCATCAATGGAACAGTGAATGGTCTAGAATCTGTATATACATCTTTGGAAAACATTGATGTAGT AGAAGTAGGTTCTTTACCGGATGCTGGCTGGGAAACTGACCCTCTAAAGGCTCAGCTTCCTCCTTGTAATGTGTTCTCCAAGTCGGAAATGTCGAGATTC ATGAAGACTAAGAAGGTTTCACCTTCTGCTTTTGCAAAGCATCAATCCACAAGAGTAAAGAAGATGCTTTTCTTGGGAGAGAATAACGTTTGGAAAAATG AGGCATCAGAGGTTCTCGGAAGAAAGAATCCTTCGAGTGCTAGTAGAAGTTCTTCTCTGGGAGCTCAAAGATCACTTCTTGTTGGTGAGAAGGATCTGAA TAGTAACGGTCACCTTTCTGCTAGTGGAGAAGTGAATGCCTCCAGTACCGATGGGAGATATCCCATGTTGCAAAATGGGGTCTCTACTAGTGTAAATAGA AGTTTAAGTGACAATCTTAGATCTAACTATGTCAGCGATGATGAGCTGGGTCCGCTGGAAGGAGACATGTGTGCTTCTACGACAGGTGTTGTGAGGGTTC AGTCTCGAAAGAAAGCAGAGATGTTTCTCGTACGCACAGATGGTTTCTCCTGTACAAGAGAAAAAGTTACTGAATCTAGCTTGGCATTCAGTCATCCAAG TACCCAGCAGCAGATGCTCATGTGGAAATCTCCACCGAAGACTGTCTTGTTGTTGAAGAAGCTGGGACAAGAACTCATGGAACAAGCTAAACAGGTACTT TGTGATCTTCATGAGAGGATTGATTTTGTTGCATGTTTGGGAGGAGATGGTGTTATACTTCATGCATCGAATTTGTTCCGAGATGCTGTTCCTCCTGTTG TGTCCTTTAATCTGGGATCTCTTGGATTCCTCACTTCGCATAGTTTTGAAGACTACCGGAAAGACCTAAAGCAGTTGATCCATGTCAACAACACAGTTGG TGTATATATAACTCTTAGAATGCGCCTCACGTGTGAAATATTTCGCCATGGTCAAGCCGTCCCTGGAAAAGTATTTGAAGTCCTGAATGAGGTGGTCGTT GATCGCGGGTCAAATCCTTACCTTTCCAAGATCGAATGCTACGAACATGACCGCCTTATTACCAAGGTGCAAGGTGATGGAGTCATTGTGGCCACTCCTA CTGGAAGTACTGCTTACTCTACTTCAGCTGGAGGTTCCATGGTACATCCAAATGTTCCTTGTATGCTCTTTACTCCAATCTGCCCCCACTCCCTCTCATT CCGGCCAGTCATACTTCCAGATTCTGCACGGATAGAACTAAAGATTCCAGAAGATGCTCGAAGCAATGCGTGGGTGTCTTTCGATGGGAAGCGAAGACAG CAACTTTCTAGAGGAGATTCCGTCAAGATATCGATGAGCCAGCACCCTCTTCCCACCGTCAACAAATACGACCAAACCGGCGACTGGTTCCACAGCTTGG TTCGCTGCCTGAACTGGAACGAAAGGCTAGACCAGAAAGCCTTGTGA
AA sequence Show only first row Show all	>Lus10028677 pacid=23164567 polypeptide=Lus10028677 locus=Lus10028677.g ID=Lus10028677.BGIv1.0 annot-version=v1.0 MMKTNTFKGTNVFMSRKLVPPEIYDALLDALKLNGAEVFPCSDPSRNSLNDYHVISSPDHEKFEDLRAKGCNLLGPQCVLSCAKEHKQFPKQSFTCCLAM DGVKVLASGFDMDEKGKLEKLVKAMGGLLCSKPTLDVSFVIVKDVLAAKYKWALDILKKPILTASWLYQCSIEHRVVPHESYRVLPFSGLTICVTGITGE ERNKIEKLITENVSGQPSAAVESSSATSCQSTGLADSDVEATLSQNMSSMFYDASMYMKKDDNEAPAPQPTNETSFSNCVANDSQSEDNDLYLADCRISL IGFGASELRKLVNMVRNGGGGWEIVPGGPGTCEKKELRSLAASGVINVVSTTWLEDCDREKREIPVRAQHMAYDLLRPKDSLNFKKGPLNGIRKSSIPGV PSDQLNVESGRPEVHSHQLMGRLDPLRTAGFPIEQKKEEKQENHVDGVLNPNATSTQIQKNSFPFDNIQKKDGQSIHHGSDDAKSQSRKPAAVFMGKTFC FSMAFPADRRTEIVEWIAQGGGELIDDGTIQNVQFTVECHGVITSSSTHTCFVSSHWVRSCLEDRKLLDVSSHILYSPLPCQIPFLGFGTFRFCVSQYDD KEKSLLRNLCFVLGAKFVEKLTKKVTHLLCKFRHGPKYDFSCKWGITAVTSEWIYACVRQDKVVDFAPFKPKEMTQQDQEDGLYAVSQFPSQSVWKVPGE PSSQLRSQSQVVTKPQLPIPKKTISSMLGAQEFIHPSKRPRNVQPGDQTSLPSSDVYSSGFNIRSETGKISKESTDTSHTVPDVAALEYLLEQTSKIHDH SSPVQTGLDKSLLPPPESTMLDEDRAGTASATGLPNDWLNSNGKRKDESNESLQDADKGMYYGFSETQTESQVVGYEEDLTGRQMLIDRNHPSHTFQPAY LLGRSWNASPSAATCPPPPPTPSMMSRLSSPVVGAFILSPPPNGDGCCKSTVEFQRRRKFRFVVSAEFPKSFSLDLGFDHSLNENQSNDQSQSPWIGPIP GDIAEVEAYCRIFRAAERFHTALMNTLCNPVTGECSVSYDFPPEERPVLEQKIVSVLGAVLSLLNKGRKDVLTGRSSVMSSFRISDVSMMEDKLPPLAVF RSEMKRCCESLHVALENYLTPDDDRSLEVWRKLQRLKNVCYDSGFSRSDECPCHTVLANWNAVYSSSSKEEIESESSKTEFWMGGQVTEEALKWLLDKGF KTIVDLRAETVQDNFYKAAIDDAILCGKMELIQIPIEVGTAPSVEQVELFASLVSDFSKKPIYIHSKEGVQRTSAMVSRWRLFRSRMPSQDTSEQKELHT ISSVDKETILNQENGCARHASQELHSSNGSSHGEVDSSVKFGKAPGINGTVNGLESVYTSLENIDVVEVGSLPDAGWETDPLKAQLPPCNVFSKSEMSRF MKTKKVSPSAFAKHQSTRVKKMLFLGENNVWKNEASEVLGRKNPSSASRSSSLGAQRSLLVGEKDLNSNGHLSASGEVNASSTDGRYPMLQNGVSTSVNR SLSDNLRSNYVSDDELGPLEGDMCASTTGVVRVQSRKKAEMFLVRTDGFSCTREKVTESSLAFSHPSTQQQMLMWKSPPKTVLLLKKLGQELMEQAKQVL CDLHERIDFVACLGGDGVILHASNLFRDAVPPVVSFNLGSLGFLTSHSFEDYRKDLKQLIHVNNTVGVYITLRMRLTCEIFRHGQAVPGKVFEVLNEVVV DRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTSAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARIELKIPEDARSNAWVSFDGKRRQ QLSRGDSVKISMSQHPLPTVNKYDQTGDWFHSLVRCLNWNERLDQKAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Lus10028677 [exp]	0	1
AT3G16560			Protein phosphatase 2C family ...		Lus10004793 [exp]	2.4	0.7571
AT2G47390			Prolyl oligopeptidase family p...		Lus10010007 [exp]	3.7	0.7513
AT5G50210		SUFE3, OLD5, QS	SULFUR E 3, ONSET OF LEAF DEAT...		Lus10019464 [exp]	4.6	0.7282
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10033125 [exp]	6.7	0.6735
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Lus10006209 [exp]	8.9	0.6999
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Lus10036857 [exp]	11.7	0.7131
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Lus10005111 [exp]	14.0	0.7130
AT1G31800		CYP97A3, LUT5	LUTEIN DEFICIENT 5, "cytochrom...		Lus10020380 [exp]	15.3	0.6956
AT1G18660			zinc finger (C3HC4-type RING f...		Lus10019075 [exp]	16.9	0.6523
					Lus10009807 [exp]	17.4	0.6734

Compare expression of checked genes

Lus10028677 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.