Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77330 435 / 1e-154 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G62380 303 / 1e-102 ATACO2, ACO2 ACC oxidase 2 (.1) AT1G12010 296 / 1e-99 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G05010 292 / 4e-98 ACO4, EAT1, EFE ethylene forming enzyme, ethylene-forming enzyme (.1) AT2G19590 248 / 6e-81 ATACO1, ACO1 ACC oxidase 1 (.1) AT5G24530 193 / 4e-59 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 191 / 3e-58 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 191 / 4e-58 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 188 / 3e-57 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 183 / 1e-54 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000857 [exp] 627 / 0 AT1G77330 440 / 2e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10035334 [exp] 315 / 7e-107 AT1G05010 495 / 6e-178 ethylene forming enzyme, ethylene-forming enzyme (.1) Lus10029992 [exp] 313 / 2e-106 AT1G05010 496 / 2e-178 ethylene forming enzyme, ethylene-forming enzyme (.1) Lus10015153 [exp] 311 / 1e-105 AT1G05010 501 / 1e-180 ethylene forming enzyme, ethylene-forming enzyme (.1) Lus10031530 [exp] 307 / 7e-104 AT1G05010 498 / 3e-179 ethylene forming enzyme, ethylene-forming enzyme (.1) Lus10008564 [exp] 271 / 9e-90 AT2G19590 423 / 6e-150 ACC oxidase 1 (.1) Lus10005037 [exp] 191 / 8e-58 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10024882 [exp] 186 / 2e-56 AT5G24530 271 / 2e-89 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030185 [exp] 184 / 9e-56 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G182700 [exp] 497 / 4e-179 AT1G77330 461 / 4e-165 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G078600 [exp] 488 / 2e-175 AT1G77330 455 / 1e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G224100 [exp] 318 / 1e-108 AT1G05010 440 / 2e-156 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.014G159000 [exp] 318 / 2e-108 AT1G05010 464 / 8e-166 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.004G003000 [exp] 318 / 3e-108 AT1G05010 467 / 6e-167 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.011G020900 [exp] 316 / 1e-107 AT1G05010 473 / 1e-169 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.006G151600 [exp] 261 / 2e-86 AT2G19590 462 / 2e-165 ACC oxidase 1 (.1) Potri.006G101100 [exp] 204 / 2e-63 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.016G117100 [exp] 199 / 5e-61 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 193 / 4e-59 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10028678 pacid=23164485 polypeptide=Lus10028678 locus=Lus10028678.g ID=Lus10028678.BGIv1.0 annot-version=v1.0 ATGGCTATCCCAGTAGTTGATTTCTCCAAGGTTGCCAATGGTGGTGCTACTCCTGAGGAAAGGGCTGCAACCATGGCCCTCATTGCGAAATACTGCGAGG AATGGGGCTTCTTTCAGTTGGTGAACCATGGGGTGGCAGAGGAGCTTCTGGAGAGGGTGAAGAAGGTGAGTTCAGAGTTCTTTAAGCATGAAAGAGAGCA AAGCTTCAAGGAATCTGAAGTTTTCAAGTCACTGAGTGATGTGGTGGATGGCCAGAAGCTTGAGAATGTTGATTGGGAAGATGTCATCACACTTCTTGAT GACAATGAGTGGCCATCACAGACTCCTGGATTCAAGGAGACAATAACAGAGTACAGGGCAGAGCTGAAGAAGCTTGCGGAGAAAGTAATGGAAGTGATGG ATGAGAACTTAGGGTTACCAACTGGTTACATCAAGAAAGCCTTCAACAATGGTGAAACAACAAAAGGAGGAAAAGGATCAGCCTTTTTCGGCACGAAAGT CAGCCACTACCCGCCATGCCCCAACCCGGAGAAGGTGAATGGACTTCGAGCACACACCGATGCCGGTGGGGTGATCCTGCTGTTCCAGGACGACGAAGTT GGCGGCCTCCAGGTCCTGAAAGACGGAGAGTGGATCGATGTCCAACCGATGAAGAACAGCATTGTGATCAACACCGGTGACCAAGTCGAGGTCCTCAGCA ATGGGAGGTACAAGAGCGCCTGGCATCGAGTTTTGGCGAAATCGGATGGGAATCGGAGGTCTATCGCTTCGTTCTACAACCCTTCGCTCACCGCCACCAT TGCTCCGGCGGATGAGCTTGTTGAGGAAGAGGTCAACAGCAAAGCTGATGAGGGCGTAATGTACCCTAAGTTTGTGTTTGGGGATTACATGTCTGTTTAT GCCGAGCAGAAGTTCGAACCGAAGGAGCCTAGGTTTCTGGCTGTGAAGGCCATGTGA
AA sequence Show only first row Show all	>Lus10028678 pacid=23164485 polypeptide=Lus10028678 locus=Lus10028678.g ID=Lus10028678.BGIv1.0 annot-version=v1.0 MAIPVVDFSKVANGGATPEERAATMALIAKYCEEWGFFQLVNHGVAEELLERVKKVSSEFFKHEREQSFKESEVFKSLSDVVDGQKLENVDWEDVITLLD DNEWPSQTPGFKETITEYRAELKKLAEKVMEVMDENLGLPTGYIKKAFNNGETTKGGKGSAFFGTKVSHYPPCPNPEKVNGLRAHTDAGGVILLFQDDEV GGLQVLKDGEWIDVQPMKNSIVINTGDQVEVLSNGRYKSAWHRVLAKSDGNRRSIASFYNPSLTATIAPADELVEEEVNSKADEGVMYPKFVFGDYMSVY AEQKFEPKEPRFLAVKAM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77330			2-oxoglutarate (2OG) and Fe(II...		Lus10028678 [exp]	0	1
AT5G22610			F-box/RNI-like/FBD-like domain...		Lus10027019 [exp]	3.5	0.9060
AT3G11040		AtENGase85B	Endo-beta-N-acetyglucosaminida...		Lus10007526 [exp]	4.5	0.9123
AT5G19970			unknown protein		Lus10019451 [exp]	8.1	0.9166
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10005078 [exp]	9.0	0.9050
AT2G24130			Leucine-rich receptor-like pro...		Lus10010772 [exp]	9.6	0.8968
AT3G26170		CYP71B19	"cytochrome P450, family 71, s...		Lus10018261 [exp]	11.4	0.9190
AT2G16750			Protein kinase protein with ad...		Lus10014122 [exp]	14.0	0.9142
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020359 [exp]	18.1	0.9055
AT3G20015			Eukaryotic aspartyl protease f...		Lus10010157 [exp]	18.4	0.8983
AT1G62422			unknown protein		Lus10031521 [exp]	19.6	0.9051

Compare expression of checked genes

Lus10028678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.