Plant FIBer expression Database

Lus10028680 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G19990 137 / 5e-38 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038848
[exp]
132 / 3e-36 AT3G19990 536 / 0.0 unknown protein
Lus10017359
[exp]
129 / 7e-35 AT3G19990 592 / 0.0 unknown protein
Lus10010154
[exp]
124 / 6e-33 AT3G19990 583 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G001200
[exp]
139 / 6e-39 AT3G19990 632 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10028680 pacid=23164598 polypeptide=Lus10028680 locus=Lus10028680.g ID=Lus10028680.BGIv1.0 annot-version=v1.0
ATGGCGACTCCTCCTCCTCCACAAACTATAGAAGATGATCTCCCTTCTCTGCTCTCGTCGCTCCACGAAGCAGGCGCAGGGGAGTTCTGGCACAAGGACG
GGACTTTCGTCGAACACCTTCACGGAACTTTCCGCATCCTCAAACAATGGGGCGCCCCTCGAGATATCCGCCTCGCCGGACTCTTCCACTCCGCCTACGC
CGCCTCCTACCTCGGCCAGCCGCTATTTCGTGACCGGGACGCCGTCAGGGAGCTCATTGGCGAGTCCGCGGAGCGGATAGTTCACCTCTTCCATGTCGCT
CCTCGCCAGGAGATCGTGCACGAGCTCCTCGTTGGGAAATACTCCGACAAGGAGCTCGTTGAACACCTGATAATGACGTCAGGTATTGTGAGGAGGGAGA
AGCTGAATTCGATCCTGCCGGAAAAAGGGATCGAATTCGGTGGGGGTGTGAGTTTGAGTAGGAGGATGGTGGCGGGGGGGGGGTTGGTGATGATGGCCGG
TCTTGGTGATGATGGCCGATTACGCGGACGAGATGTTCGGGTTTCAGGACGAAATGTACGAGAATTCAAACGGGAGGATGGATTTTTGCGGTGGGGAGTT
TTCGACGTTGTGGCCGGGGGAAGGGAAGCCGGGGTTGTGGGTGAACATGGTGTCGAGATTGGGCGCGATGTACAATCTAATTCGTCGGGAGGAAGAGATT
TTCGTTGA
AA sequence
>Lus10028680 pacid=23164598 polypeptide=Lus10028680 locus=Lus10028680.g ID=Lus10028680.BGIv1.0 annot-version=v1.0
MATPPPPQTIEDDLPSLLSSLHEAGAGEFWHKDGTFVEHLHGTFRILKQWGAPRDIRLAGLFHSAYAASYLGQPLFRDRDAVRELIGESAERIVHLFHVA
PRQEIVHELLVGKYSDKELVEHLIMTSGIVRREKLNSILPEKGIEFGGGVSLSRRMVAGGGLVMMAGLGDDGRLRGRDVRVSGRNVREFKREDGFLRWGV
FDVVAGGREAGVVGEHGVEIGRDVQSNSSGGRDFR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G19990 unknown protein Lus10028680
[exp]
0 1
AT5G54370 Late embryogenesis abundant (L... Lus10017577
[exp]
1.4 0.9912
AT3G20820 Leucine-rich repeat (LRR) fami... Lus10031377
[exp]
1.4 0.9909
AT3G19990 unknown protein Lus10028681
[exp]
2.8 0.9894
AT5G10130 Pollen Ole e 1 allergen and ex... Lus10041707
[exp]
3.0 0.9899
AT5G13930 ATCHS, TT4, CHS TRANSPARENT TESTA 4, CHALCONE ... Lus10011746
[exp]
3.2 0.9893
AT4G32890 GATA GATA9 GATA transcription factor 9 (.... Lus10011430
[exp]
4.2 0.9880
AT5G54370 Late embryogenesis abundant (L... Lus10033540
[exp]
4.6 0.9877
AT5G40830 ATRAD3, ATATR S-adenosyl-L-methionine-depend... Lus10020803
[exp]
5.7 0.9839
AT4G12730 FLA2 FASCICLIN-like arabinogalactan... Lus10001752
[exp]
6.7 0.9821
AT1G80530 Major facilitator superfamily ... Lus10017480
[exp]
7.1 0.9749

Lus10028680 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.