Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49610 62 / 2e-10 F-box family protein (.1) AT1G49990 57 / 8e-09 F-box family protein (.1) AT1G15680 57 / 1e-08 F-box family protein (.1) AT3G26010 51 / 7e-07 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G23950 51 / 8e-07 F-box family protein (.1) AT4G22430 50 / 1e-06 F-box family protein (.1) AT3G23970 50 / 2e-06 F-box family protein (.1) AT5G15710 47 / 2e-05 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G47300 45 / 8e-05 F-box family protein (.1) AT5G18160 43 / 0.0003 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000860 [exp] 804 / 0 AT5G49610 52 / 3e-07 F-box family protein (.1) Lus10003922 [exp] 285 / 6e-92 AT3G26010 60 / 1e-09 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037467 [exp] 286 / 3e-91 AT3G26010 61 / 1e-09 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10036954 [exp] 192 / 6e-57 ND 48 / 5e-06 Lus10003923 [exp] 172 / 1e-49 ND 40 / 0.002 Lus10019151 [exp] 144 / 2e-39 ND / Lus10014682 [exp] 126 / 9e-34 ND 37 / 0.006 Lus10036951 [exp] 123 / 7e-33 ND 44 / 2e-05 Lus10006880 [exp] 105 / 3e-25 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G004800 [exp] 112 / 6e-27 AT5G49610 65 / 3e-11 F-box family protein (.1) Potri.011G000700 [exp] 91 / 9e-20 AT3G15910 58 / 5e-09 unknown protein Potri.009G132400 [exp] 66 / 2e-11 ND / Potri.010G149000 [exp] 65 / 3e-11 AT5G49610 528 / 0.0 F-box family protein (.1) Potri.011G121200 [exp] 57 / 1e-08 AT4G12560 116 / 9e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G254000 [exp] 57 / 2e-08 AT5G07610 149 / 1e-40 F-box family protein (.1) Potri.013G067800 [exp] 52 / 5e-07 AT5G07610 131 / 4e-34 F-box family protein (.1) Potri.008G215800 [exp] 50 / 2e-06 AT3G07870 101 / 3e-23 F-box and associated interaction domains-containing protein (.1) Potri.008G216000 [exp] 49 / 3e-06 AT1G47340 65 / 9e-12 F-box and associated interaction domains-containing protein (.1) Potri.007G027300 [exp] 48 / 8e-06 AT5G49610 80 / 2e-16 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028682 pacid=23164507 polypeptide=Lus10028682 locus=Lus10028682.g ID=Lus10028682.BGIv1.0 annot-version=v1.0 ATGGGTAGTTTACCATGCATCAACGATGTCCTGTCTCACCATTTGCTGATAGAAGTTCTGGTTAGGATTCCTCTGAAAGATGCTTTTCGATCTAGGTCTG TATGCAAGCTGTGGCTCTCGACTCTCCGCGATGATCCACATTACGTTGCTGGATTCGTTCAGCACCGAATCAGTGAACCCAATTCGAACAATGATGATCA TCAGGAGCTGATGAATGTGCAATGGCACCACAGCGAAATGCTTTTGGTGAAATCATCCGATAATGCTCTCACGGCTTCCCAATTCTCGTTGGATTTCCTC CCGTTCCACGACGAATCCACTTCTCCACACCGGAGGATTTCGATTCGGGAGATTGTAGGCTCTTCCAATGGCTTGATCTTGTTCTCGCCTATCAAGAAGA CCGCTTGTGTCGAGTATTACATCTGCAACCCTCTTACTAAGCAGTGGCTTGCACTTCCATCTCCTCCCGGTCGCCACCTTCTCGATGTCCAGGTCGGTTT TATCTGCGATCCATTTTACAACCGTAATGTCAATAACGGTTCAGTAGCTTTGAATGATGAATTCGGTATGAAGGTGGTCCATCTATATTATGGTCTTGTC AATGTCGAAACGAACCGTCCTGAAAGGATGGATGTGGAGGTGTTCTCGTCCCAGACAGGAACCTGGACTACATCTAAGGTGCAATTGCCTAACGGTGTTC GATTCAAAACCGATCCCGGACCTCTAGTTCCTCACAAAGGAAGGCTTTACTGGCTCGTGGAACAATGCGACATTTTGATCTATGATCCTGAACAGAACGA GTTTCTCCTCGAGCGACACGACCCTCCACGTGAAGCATTGTACACTTTCGGATATTGGGTTAGGCAGTTGGCCACATTCAGAGGGCTTAGTCTATGTAGA GGCTCGTTTTGCATCGGTCAAGCTTGGAATGCGCGGCTGAGAGTGTTTATGCTCTCAGTCGACGATGGCAAATGGCGTCTAAAGCACGACGTTGACCTCT ACAACGAGATGCAATGCAGTTCGAGTACCGTGAGGCAGAAGGTGCGGTTCTACCCTGAATCCATGGTGTTCTGGACTATGCACCCCGATGATTCCATGGT GGCCTACTTGACCCTGGACAGCGTGATACTCGAGTGTAATTTCCGGTACAAGACGATGAAAGTGATGTCCGATCGCCATGATAATCGCTATGAGGGTGTT AATTCGATGCTCCTCGGCTGGTCTAACGTGGTTACGTGTTCGCTTCCATTGTGGCCTATTCCTCTTCCTGCAACTCCCAACTGTTTGAAGAAAGTTGGGT TCAATTCGATTGATGAATCGAACTAG
AA sequence Show only first row Show all	>Lus10028682 pacid=23164507 polypeptide=Lus10028682 locus=Lus10028682.g ID=Lus10028682.BGIv1.0 annot-version=v1.0 MGSLPCINDVLSHHLLIEVLVRIPLKDAFRSRSVCKLWLSTLRDDPHYVAGFVQHRISEPNSNNDDHQELMNVQWHHSEMLLVKSSDNALTASQFSLDFL PFHDESTSPHRRISIREIVGSSNGLILFSPIKKTACVEYYICNPLTKQWLALPSPPGRHLLDVQVGFICDPFYNRNVNNGSVALNDEFGMKVVHLYYGLV NVETNRPERMDVEVFSSQTGTWTTSKVQLPNGVRFKTDPGPLVPHKGRLYWLVEQCDILIYDPEQNEFLLERHDPPREALYTFGYWVRQLATFRGLSLCR GSFCIGQAWNARLRVFMLSVDDGKWRLKHDVDLYNEMQCSSSTVRQKVRFYPESMVFWTMHPDDSMVAYLTLDSVILECNFRYKTMKVMSDRHDNRYEGV NSMLLGWSNVVTCSLPLWPIPLPATPNCLKKVGFNSIDESN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49610			F-box family protein (.1)		Lus10028682 [exp]	0	1
AT5G37830		OXP1	oxoprolinase 1 (.1)		Lus10024411 [exp]	1.7	0.9051
AT1G10170		ATNFXL1	NF-X-like 1 (.1)		Lus10034470 [exp]	2.0	0.9021
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10035827 [exp]	4.9	0.8891
AT5G49610			F-box family protein (.1)		Lus10000860 [exp]	9.2	0.8964
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Lus10029591 [exp]	9.2	0.8837
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10000883 [exp]	18.3	0.8479
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10035255 [exp]	29.7	0.8860
AT1G11925			Stigma-specific Stig1 family p...		Lus10012679 [exp]	34.1	0.8781
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10007803 [exp]	42.9	0.8402
AT5G50870		UBC27	ubiquitin-conjugating enzyme 2...		Lus10008766 [exp]	43.0	0.8739

Compare expression of checked genes

Lus10028682 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.