Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06430 632 / 0 AtPPR2, EMB2750 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53170 328 / 4e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48730 310 / 4e-100 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39620 169 / 2e-46 ATPPR5, EMB2453 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G09900 136 / 2e-34 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G74850 132 / 1e-32 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT3G16010 124 / 3e-30 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G18940 124 / 7e-30 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G02860 124 / 8e-30 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G18110 122 / 4e-29 EMB1270 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000862 [exp] 900 / 0 AT3G06430 644 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027552 [exp] 514 / 1e-180 AT3G06430 501 / 1e-175 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039311 [exp] 372 / 3e-128 AT3G06430 358 / 5e-123 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022787 [exp] 320 / 8e-104 AT5G48730 687 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011849 [exp] 313 / 4e-101 AT5G48730 681 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024893 [exp] 291 / 9e-93 AT3G53170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035850 [exp] 165 / 5e-45 AT4G39620 579 / 0.0 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10013894 [exp] 135 / 2e-33 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 134 / 2e-33 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G153900 [exp] 635 / 0 AT3G06430 717 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G098700 [exp] 624 / 0 AT3G06430 692 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G243600 [exp] 338 / 7e-111 AT5G48730 691 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G058300 [exp] 311 / 1e-100 AT3G53170 618 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G082400 [exp] 166 / 1e-45 AT4G39620 625 / 0.0 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.017G036400 [exp] 134 / 4e-33 AT3G18110 1949 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G123900 [exp] 133 / 7e-33 AT3G18110 1974 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046200 [exp] 128 / 1e-31 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.015G069100 [exp] 126 / 1e-30 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.006G166200 [exp] 124 / 5e-30 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10028683 pacid=23164495 polypeptide=Lus10028683 locus=Lus10028683.g ID=Lus10028683.BGIv1.0 annot-version=v1.0 ATGTCCCTCCAATTTTCCTCATTCCTCCAAACTCCTTCAGGCCGATTAACAGGAACCGGTCAATCCCCTCCCGACGGATACCGATCTTCATCGTCCTTTT CCTTCTCCTTCCGCATCCGTCCATCGTTTCATCCCGTCTCCGCCGCCGCCTCATCTGCGCCGGCCACAACACGCCGACACTGGAAGCAAGGCGAATTCCC TGGAAGAACGCAGCCTTCTGACTCCGATCGTCGCAATGCACCACTGAAAAATGCGAAGAAGAAATTGGATCGTAAGGAGGACGCCACAGCTTGGGCAAAT ACCGTCACCGAAGCACTATCCGACTCCATCGCGAACAAGCAGTGGCAGCGGTCTCTCGAGGTCTTCGAGATGCTGAAACAGCAGAGCTTCTACTATCCTA AAGAAGGTACATACATGAAACTCCTAGTCCTTTTAGGGAAATCTGGACAGCCTGAACTTGCACACCAACTGTTCGACGAAATGCTTGAACAGGGGATTCC TCCCACAACTGAACTCTATACTGCACTTCTCGGTGCTTATTGCCGTAGTGGATTAATCAATAAGGTTTTTGTAACCCTCGATGTTATGAAATCGATACCG CAATGTCAGCCTGATGTGTTCACTTACAGCATGATCCTCAAGGCCTGCGTCGACTCATCCCGATTCGATCTCGTAGATTCGATCTACACTGAAATGGAGA AAGGCTTAATCTCGCTGAATACCGTGACTCAAAACATTGTGTTAAGCGGATACTGTAAAGCCGGATTATACGATCAAATGGAGAAAGTCTTATCATCAAT GCTGCAGAATCCGAATTCGAAACCGGACGTATGGACGATGAACATAATCATCGCAATCTTCGGCAACAAAGGCCGAATCGAGCTGATGGAGCAATGGTAC GAGAAGTTTCGAGACTACGGAGTCGAGCCAGAGACACGAACGTTCAACATCCTGATCGGAGCCTACGGCAAGGCTCGAAGGTACGACAAGATGTCTTCGG TGATGGAGTACATGCGCAAGCTCGAGTATCCATGGATGAGCTCGACGTACAACAATGTGATCGAGGCATTTGCGGATGTCGGGGACTCGAAGAACATGGA GTACACGTTCGACCAGATGCGGGCCGAGAGGATGAAGACCGATTCTAAGACGTTCTCGTGTTTGGTTCGAGGGTACGCGAATGCCGGGATGTATGGTAAA GTGATGAAGACGGTGGAGCTCGCCGCGAGGCTCGAGATCCCGAGGGATAAGTCGTTTTATAACGCGGTGATCGAGGCGTGCGCCAAGGCCCGGGATTTGA TGGAGATGGAGAGGGTTTATGTGAGGATGAAGGAGGAGAAGTGTGAAGGTGATGAGGTTACTTATAAGGTTATGATGGATGCTTATAGCGAAGAAGGGAT GAATGATAAAGTTTACTATTTGGAGCAAGAGATTGCTGCTCGGGTCGGGTCGGGTCGGATGGAAAGCCGTGATGACGAATGGTTCTAG
AA sequence Show only first row Show all	>Lus10028683 pacid=23164495 polypeptide=Lus10028683 locus=Lus10028683.g ID=Lus10028683.BGIv1.0 annot-version=v1.0 MSLQFSSFLQTPSGRLTGTGQSPPDGYRSSSSFSFSFRIRPSFHPVSAAASSAPATTRRHWKQGEFPGRTQPSDSDRRNAPLKNAKKKLDRKEDATAWAN TVTEALSDSIANKQWQRSLEVFEMLKQQSFYYPKEGTYMKLLVLLGKSGQPELAHQLFDEMLEQGIPPTTELYTALLGAYCRSGLINKVFVTLDVMKSIP QCQPDVFTYSMILKACVDSSRFDLVDSIYTEMEKGLISLNTVTQNIVLSGYCKAGLYDQMEKVLSSMLQNPNSKPDVWTMNIIIAIFGNKGRIELMEQWY EKFRDYGVEPETRTFNILIGAYGKARRYDKMSSVMEYMRKLEYPWMSSTYNNVIEAFADVGDSKNMEYTFDQMRAERMKTDSKTFSCLVRGYANAGMYGK VMKTVELAARLEIPRDKSFYNAVIEACAKARDLMEMERVYVRMKEEKCEGDEVTYKVMMDAYSEEGMNDKVYYLEQEIAARVGSGRMESRDDEWF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10028683 [exp]	0	1
AT3G54090		FLN1	fructokinase-like 1 (.1)		Lus10021118 [exp]	1.7	0.9386
AT3G22150			Tetratricopeptide repeat (TPR)...		Lus10010473 [exp]	3.0	0.9125
AT1G06190			Rho termination factor (.1.2)		Lus10022920 [exp]	3.5	0.9224
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Lus10026460 [exp]	3.9	0.9120
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10027552 [exp]	4.7	0.8933
AT4G02990		RUG2, BSM	RUGOSA 2, BELAYA SMERT, Mitoch...		Lus10014877 [exp]	6.3	0.9122
AT3G21200		PGR7	proton gradient regulation 7 (...		Lus10035751 [exp]	8.0	0.8864
AT2G16800			high-affinity nickel-transport...		Lus10019792 [exp]	9.2	0.8742
AT4G27990		ATYLMG1-2	YGGT family protein (.1)		Lus10020405 [exp]	9.9	0.8998
AT3G59760		ATCS-C, OASC	ARABIDOPSIS THALIANA CYSTEINSY...		Lus10027056 [exp]	10.2	0.8773

Compare expression of checked genes

Lus10028683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.