Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33811 82 / 5e-19 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G55050 80 / 3e-18 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G08460 79 / 5e-18 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45670 76 / 9e-17 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29670 76 / 9e-17 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G16230 74 / 2e-16 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 74 / 3e-16 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 73 / 6e-16 GLIP7 GDSL-motif lipase 7 (.1) AT4G18970 71 / 4e-15 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G37690 71 / 5e-15 SGNH hydrolase-type esterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028738 [exp] 102 / 7e-27 AT1G29670 241 / 2e-77 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028686 [exp] 101 / 4e-26 AT1G29670 240 / 1e-76 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 86 / 2e-20 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011998 [exp] 86 / 2e-20 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10000893 [exp] 82 / 3e-19 AT1G33811 504 / 3e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10015842 [exp] 79 / 8e-18 AT5G45670 325 / 7e-110 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10039877 [exp] 78 / 1e-17 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10018641 [exp] 78 / 1e-17 AT5G37690 516 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10005413 [exp] 77 / 2e-17 AT1G29670 399 / 3e-139 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G115900 [exp] 96 / 5e-24 AT1G29670 255 / 2e-82 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.018G008100 [exp] 84 / 7e-20 AT1G29670 345 / 8e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102400 [exp] 81 / 7e-19 AT1G33811 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.012G060700 [exp] 81 / 9e-19 AT1G29660 306 / 5e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076400 [exp] 79 / 3e-18 AT5G45670 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008904 [exp] 77 / 8e-18 AT4G18970 246 / 3e-80 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.003G213700 [exp] 78 / 1e-17 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005402 [exp] 77 / 2e-17 AT1G29670 341 / 3e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008906 [exp] 77 / 2e-17 AT1G29670 345 / 1e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008902 [exp] 77 / 2e-17 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028685 pacid=23164558 polypeptide=Lus10028685 locus=Lus10028685.g ID=Lus10028685.BGIv1.0 annot-version=v1.0 ATGACGCTGGCGCCATCTCCGCCGCAACGCCTCCATCTCACCGCCGCCGCCATCTCCATCATTCTCGCCGCCGCCACATGTTTCCCACCGCCGAAGGCAT CTGCCCATGCCGTTAAACCGGTAAACGGGATGTTCGTGTTCGGGTCATCGCTGGTAGACAACGGGAACAACAACTTCTTCCCTTTTACTCTATCCAAGAC TAACTATCCTCCGTATGGCGTAGACTTCCCGGCAGGGGAACCCACTGGAAGGTACACCAACGGCAAGAACGTCGCGGACTTGCTCTGCGACAAGCTGTGC CTTCCTCTGCTTCCCCGGTCGCGTGACCCTGTTATAGCAGGCGGTGGCGGGGAGTTGATTGTTCGCGGTGTTGATTTTGCTTCCGGGGCTTCAGGAATTC GCGACGAGACTGGCGCCATTGCCATTGAGAGGTAG
AA sequence Show only first row Show all	>Lus10028685 pacid=23164558 polypeptide=Lus10028685 locus=Lus10028685.g ID=Lus10028685.BGIv1.0 annot-version=v1.0 MTLAPSPPQRLHLTAAAISIILAAATCFPPPKASAHAVKPVNGMFVFGSSLVDNGNNNFFPFTLSKTNYPPYGVDFPAGEPTGRYTNGKNVADLLCDKLC LPLLPRSRDPVIAGGGGELIVRGVDFASGASGIRDETGAIAIER

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08460			GDSL-like Lipase/Acylhydrolase...		Lus10028685 [exp]	0	1
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Lus10025903 [exp]	3.2	0.9485
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10040118 [exp]	3.2	0.9425
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10036725 [exp]	6.9	0.9376
AT2G05920			Subtilase family protein (.1)		Lus10006689 [exp]	7.4	0.9323
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10007875 [exp]	7.7	0.9020
AT1G20870			HSP20-like chaperones superfam...		Lus10007642 [exp]	9.2	0.9314
AT3G50470		MLA10, HR3	INTRACELLULAR MILDEW A 10, hom...		Lus10009328 [exp]	10.5	0.9185
AT5G36930			Disease resistance protein (TI...		Lus10029921 [exp]	11.5	0.9403
AT5G19890			Peroxidase superfamily protein...		Lus10026748 [exp]	13.4	0.9106
AT1G65890		AAE12	acyl activating enzyme 12 (.1)		Lus10031367 [exp]	14.2	0.8801

Compare expression of checked genes

Lus10028685 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.