Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29670 237 / 3e-75 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 226 / 6e-71 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 222 / 2e-69 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G45670 218 / 4e-68 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G08460 204 / 4e-62 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 201 / 2e-61 GLIP7 GDSL-motif lipase 7 (.1) AT1G71691 197 / 2e-59 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G33811 195 / 4e-59 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71250 188 / 3e-56 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 178 / 1e-52 SGNH hydrolase-type esterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028738 [exp] 615 / 0 AT1G29670 241 / 2e-77 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041847 [exp] 236 / 1e-74 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011996 [exp] 231 / 1e-72 AT1G29670 451 / 3e-159 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011998 [exp] 225 / 2e-70 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 222 / 2e-69 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011997 [exp] 222 / 3e-69 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002777 [exp] 216 / 8e-67 AT5G45670 548 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016918 [exp] 207 / 3e-63 AT2G23540 381 / 6e-131 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016929 [exp] 206 / 5e-63 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G115900 [exp] 369 / 9e-127 AT1G29670 255 / 2e-82 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076500 [exp] 229 / 3e-72 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G064500 [exp] 224 / 4e-70 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.018G008100 [exp] 223 / 4e-70 AT1G29670 345 / 8e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102500 [exp] 206 / 2e-63 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.011G076400 [exp] 206 / 4e-63 AT5G45670 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.003G213700 [exp] 203 / 3e-62 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G067600 [exp] 202 / 1e-61 AT1G71250 473 / 9e-168 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G076600 [exp] 201 / 3e-61 AT1G71691 477 / 5e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.013G102400 [exp] 199 / 2e-60 AT1G33811 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10028686 pacid=23164445 polypeptide=Lus10028686 locus=Lus10028686.g ID=Lus10028686.BGIv1.0 annot-version=v1.0 ATGCCGCCACCGCCGCCGCCGAGGAAGCTCTTCCTTACCGCCACCGCCATCCTCATAATTCTCACGGCGGCGCCCACCACATGTAAATTACAAGAAACAA CGGAGACAAACCACCATTCTTTGAACGGGATGTTCGTCTTCGGCTCTTCCTTGGTCGACAATGGAAACAATGATTTCCTCCCCGGAGCTCTGTCCAGGGC CCGATACTCGCCGTACGGCGTCGATTTTCCAGCGGGAGCTACCGGGAGATACACCAACGGGAAGAATGTCGTGGATGTTTTCACGGATAATCTCCATCTT CCTCCTCCTCCGCCTTCACGTTCCCCCGAAGCAGCCGGGAAGGAGATTTTCCACGGCGTCGACTTTGCTTCCGGCGGTTCCGGAATTTTCGACGACACCG GTTCCATCGCCGGTCAAGTGATACCTTTGAACCAACAAATTAGAGATTTCGAAGAGACCGTGCTACCGAAACTCGAAAAGTATACCGGTTCTTCGGGCAA AGAGTTACTATCGAAATACCTAATATTGGTGGGAGTTGGTGGCAACGATTACACTCTCAATTACTTCCTCAATCTAACCAACCCAAGACCAAGCCTTGAA GACTTCACTTCCAACCTCATTTCCACTTTGTCAGCAAAAATTCAGCATCTTCAGAGTTTAGGAGCTCGAAAGTTCGTGTTGATGTCACTCTACCCACTAG GGTGCAGCCCTACGGTGCTGGTCAGGAACCCAGCAACCGGCACGACCACCTGCTCTCAGCCGTTGAACCAAGCCGCTCAGCTGTTCAACTCGAAGCTAAA AACGATGGTGGATCAGTTGAACAAAAAGCTACCGTGTTCGAAGTTTGTGCTCGTCAATTCCTATGGCATCATCGACGGGATCCTCAGTAACCCTAGCTTA GCAGGATTCCGGGACACGAGCAATTCGTGCTGCGAAGTGATTACGATACTGTGTAACCGAGGTGGGAAGGTATGTGAAGATAGGAAGGGCTATGTGTACT TCGACGGTCTCCATCCGACCGAAGCAGTGAATGTTCAACTTGCAAACAAGGCGTACGATTCAAGCAGCACCGACGATGTTTACCCTATCAATGTCAAGCA ATTGGTCGAACTGTAG
AA sequence Show only first row Show all	>Lus10028686 pacid=23164445 polypeptide=Lus10028686 locus=Lus10028686.g ID=Lus10028686.BGIv1.0 annot-version=v1.0 MPPPPPPRKLFLTATAILIILTAAPTTCKLQETTETNHHSLNGMFVFGSSLVDNGNNDFLPGALSRARYSPYGVDFPAGATGRYTNGKNVVDVFTDNLHL PPPPPSRSPEAAGKEIFHGVDFASGGSGIFDDTGSIAGQVIPLNQQIRDFEETVLPKLEKYTGSSGKELLSKYLILVGVGGNDYTLNYFLNLTNPRPSLE DFTSNLISTLSAKIQHLQSLGARKFVLMSLYPLGCSPTVLVRNPATGTTTCSQPLNQAAQLFNSKLKTMVDQLNKKLPCSKFVLVNSYGIIDGILSNPSL AGFRDTSNSCCEVITILCNRGGKVCEDRKGYVYFDGLHPTEAVNVQLANKAYDSSSTDDVYPINVKQLVEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10028686 [exp]	0	1
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Lus10002230 [exp]	6.1	0.8114
AT1G12330			unknown protein		Lus10024559 [exp]	8.4	0.7927
AT1G18490			Protein of unknown function (D...		Lus10027254 [exp]	8.9	0.7194
AT4G03110		AtRBP-DR1	RNA-binding protein-defense re...		Lus10005926 [exp]	9.8	0.7742
AT1G59640	bHLH	ZCW32, bHLH031...	BIG PETAL UB, BIG PETAL P (.1....		Lus10030807 [exp]	11.5	0.7209
AT4G03110		AtRBP-DR1	RNA-binding protein-defense re...		Lus10040910 [exp]	11.7	0.7624
AT3G58060			Cation efflux family protein (...		Lus10029304 [exp]	12.2	0.7146
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10017771 [exp]	12.5	0.7520
AT5G62360			Plant invertase/pectin methyle...		Lus10031717 [exp]	13.5	0.7920
AT4G30610		SCPL24, BRS1	SERINE CARBOXYPEPTIDASE 24 PRE...		Lus10015489 [exp]	16.7	0.7805

Compare expression of checked genes

Lus10028686 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.