Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24630 522 / 0 DHHC-type zinc finger family protein (.1) AT5G50020 501 / 9e-176 DHHC-type zinc finger family protein (.1.2) AT3G26935 401 / 1e-136 DHHC-type zinc finger family protein (.1) AT5G41060 360 / 3e-121 DHHC-type zinc finger family protein (.1.2) AT3G48760 350 / 5e-116 DHHC-type zinc finger family protein (.1) AT3G56930 318 / 2e-103 DHHC-type zinc finger family protein (.1.2) AT5G05070 291 / 4e-94 DHHC-type zinc finger family protein (.1) AT3G56920 278 / 7e-90 DHHC-type zinc finger family protein (.1) AT2G40990 273 / 4e-87 DHHC-type zinc finger family protein (.1) AT3G60800 91 / 5e-20 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028737 [exp] 761 / 0 AT4G24630 582 / 0.0 DHHC-type zinc finger family protein (.1) Lus10033527 [exp] 426 / 3e-147 AT4G24630 415 / 1e-144 DHHC-type zinc finger family protein (.1) Lus10032009 [exp] 410 / 5e-140 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10035177 [exp] 408 / 3e-139 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10020844 [exp] 398 / 5e-136 AT5G50020 405 / 3e-140 DHHC-type zinc finger family protein (.1.2) Lus10016754 [exp] 348 / 2e-115 AT3G26935 473 / 6e-165 DHHC-type zinc finger family protein (.1) Lus10022451 [exp] 347 / 5e-115 AT3G26935 486 / 3e-170 DHHC-type zinc finger family protein (.1) Lus10012096 [exp] 313 / 5e-102 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10010447 [exp] 309 / 3e-97 AT3G56930 451 / 3e-152 DHHC-type zinc finger family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G195300 [exp] 634 / 0 AT4G24630 555 / 0.0 DHHC-type zinc finger family protein (.1) Potri.002G065500 [exp] 633 / 0 AT4G24630 543 / 0.0 DHHC-type zinc finger family protein (.1) Potri.007G077000 [exp] 450 / 3e-157 AT4G24630 446 / 6e-157 DHHC-type zinc finger family protein (.1) Potri.001G325400 [exp] 397 / 4e-135 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1) Potri.017G063800 [exp] 395 / 3e-134 AT3G26935 671 / 0.0 DHHC-type zinc finger family protein (.1) Potri.015G101900 [exp] 372 / 5e-125 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1) Potri.001G070100 [exp] 372 / 6e-125 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.003G160600 [exp] 371 / 8e-125 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.012G103300 [exp] 365 / 4e-122 AT3G26935 507 / 1e-178 DHHC-type zinc finger family protein (.1) Potri.016G025100 [exp] 328 / 3e-107 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10028687 pacid=23164468 polypeptide=Lus10028687 locus=Lus10028687.g ID=Lus10028687.BGIv1.0 annot-version=v1.0 ATGTTGCATATTGAGAGATTGGGAGGAAACAATGAAGATTTCGTGACATTTCTTATTATTGTTCTATTGGCAATTCTGAAAGATCTATTATTTCAGTCTG CTTGTAACCGTGTAGGTACTATGGTGCTTGAATTGTGCTTGAACATCCTTGAAAAGATTAGTCGTTTCTCTGTTATTTCTAAAGTTGAATGCTTGAAGTT CTCCTTTCTTGATACATGTTCGAAGTTCATATTCGGAGGGAGATTCATATTCGGACCAGATGCTAAGTCATTAGTAGTCACCTTGTCGCTAATCATCATT CCCGTCACTATCTTTTGTGTATTCGTTGCTAGGCATCTTCGTCATGAATTCTCACCCTACGACGCAGGGTATGCTATTCTGGTGGTTGCAATAGCCTTCA CCGTCTATGTATTGGTTCTTCTGTTTATAACATCAGCACGGGACCCTGGAATCCTACCTCGAAATCTGCATCCGCCAGAAGAAGAGTTCCGTTATGAATC TTCAGCATCAGCCGAGGCTGGGGGGAGACAGACACCGAGCCTCCAGTTTCCCCGGACAAAGGAAGTGATGGTTAATGGAATTCCTGTTCGGGTGAAATAC TGCGATACGTGTATGCTTTATCGTCCTCCCCGGTGCTCTCACTGTTCCATCTGCAACAATTGTGTCGAACGGTTCGACCATCATTGTCCCTGGGTTGGCC AATGCATCGGACTGCGGAACTACCGATTCTTCTTCATGTTTGTTTCGTCTGCAACTCTTCTATGCATATATGTGTTCTCCATATATGCATTCTACATTAA GGTTCTGATGGATGAAAACCACGGCACGGTTTGGAAGGCGATGAAGGAATCTCCTGCTTCTGTCATACTAATGGCTTATTGTTTTATCTCATTATGGTTC GTCGGAGGACTCACCGGGTTTCACTTATATCTCATCGGGACTAATCAGACAACCTATGAAAACTTCAGATACCGATCAGACAACAGGATCAACGTGTACA ACCTAGGTTGTGTCACCAATTTTTCGGAGGTCTTTTGCACAGAGGTTAAGCCGTCCAAAAACAAGTTCCGAGCATTCGTTCAAGAGGAAGTCTCACGACC CACACTGCCAACCACACGAGAAGAAGAAGGCAGAGGAGGAGAAGATTCCTGTGGTGGGAATCCGCGTCCGAAGGTGGAAGATGATTTAGAGATCGGCGAG GACCTGTTGCAAATCTCCCAGCGTCGTAACGTGGAAGCAATTGACGAGGACATATGCAGCAGAGGGAGCAACGGCGGCCTTCCCCATAATACATCGGACG TGGATTCTGTACTGAGTGCAGATCATCGAGCCCATGTCGTTAGAGGCGAGAATGCTAGGCATTCGAGTTGGGGACGGAGAAGCGGGAGCTGGGATATTTC GTCGGAAGTTGCTGCTAACTCGAACGTGGCTGAAGCTAGAAGTTTAAGCTCGTTGAACGAAACACGGCAGCAATGA
AA sequence Show only first row Show all	>Lus10028687 pacid=23164468 polypeptide=Lus10028687 locus=Lus10028687.g ID=Lus10028687.BGIv1.0 annot-version=v1.0 MLHIERLGGNNEDFVTFLIIVLLAILKDLLFQSACNRVGTMVLELCLNILEKISRFSVISKVECLKFSFLDTCSKFIFGGRFIFGPDAKSLVVTLSLIII PVTIFCVFVARHLRHEFSPYDAGYAILVVAIAFTVYVLVLLFITSARDPGILPRNLHPPEEEFRYESSASAEAGGRQTPSLQFPRTKEVMVNGIPVRVKY CDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRFFFMFVSSATLLCIYVFSIYAFYIKVLMDENHGTVWKAMKESPASVILMAYCFISLWF VGGLTGFHLYLIGTNQTTYENFRYRSDNRINVYNLGCVTNFSEVFCTEVKPSKNKFRAFVQEEVSRPTLPTTREEEGRGGEDSCGGNPRPKVEDDLEIGE DLLQISQRRNVEAIDEDICSRGSNGGLPHNTSDVDSVLSADHRAHVVRGENARHSSWGRRSGSWDISSEVAANSNVAEARSLSSLNETRQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24630			DHHC-type zinc finger family p...		Lus10028687 [exp]	0	1
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10010717 [exp]	3.2	0.7763
AT2G31440			unknown protein		Lus10027036 [exp]	3.9	0.7640
AT5G35330		MBD2, MBD02, AT...	METHYL-CPG-BINDING DOMAIN PROT...		Lus10021593 [exp]	7.5	0.7569
AT5G27490			Integral membrane Yip1 family ...		Lus10004473 [exp]	9.7	0.7631
AT4G27630		GTG2	GPCR-type G protein 2 (.1.2.3)		Lus10020351 [exp]	10.9	0.7691
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Lus10033187 [exp]	14.1	0.7483
AT5G25510			Protein phosphatase 2A regulat...		Lus10033069 [exp]	15.3	0.7629
AT4G10110			RNA-binding (RRM/RBD/RNP motif...		Lus10030350 [exp]	16.2	0.7301
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10038753 [exp]	16.7	0.7635
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10002178 [exp]	20.7	0.7611

Compare expression of checked genes

Lus10028687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.