Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11290 244 / 8e-79 Peroxidase superfamily protein (.1) AT4G36430 243 / 1e-78 Peroxidase superfamily protein (.1) AT2G18150 243 / 3e-78 Peroxidase superfamily protein (.1) AT1G05260 241 / 7e-78 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT4G33420 237 / 3e-76 Peroxidase superfamily protein (.1) AT2G18140 236 / 8e-76 Peroxidase superfamily protein (.1) AT3G50990 236 / 1e-75 Peroxidase superfamily protein (.1) AT1G05250 236 / 1e-75 Peroxidase superfamily protein (.1) AT1G05240 236 / 1e-75 Peroxidase superfamily protein (.1) AT1G14550 234 / 3e-75 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028736 [exp] 559 / 0 AT1G05260 266 / 4e-88 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10038054 [exp] 352 / 4e-121 AT5G51890 264 / 7e-87 Peroxidase superfamily protein (.1) Lus10032926 [exp] 287 / 8e-96 AT1G05260 292 / 5e-98 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10009990 [exp] 256 / 1e-83 AT2G41480 233 / 2e-74 Peroxidase superfamily protein (.1) Lus10031664 [exp] 251 / 1e-81 AT5G51890 453 / 1e-161 Peroxidase superfamily protein (.1) Lus10038055 [exp] 250 / 4e-81 AT2G41480 243 / 2e-78 Peroxidase superfamily protein (.1) Lus10027405 [exp] 249 / 9e-81 AT5G51890 448 / 2e-159 Peroxidase superfamily protein (.1) Lus10018374 [exp] 248 / 2e-80 AT3G01190 414 / 4e-146 Peroxidase superfamily protein (.1) Lus10029543 [exp] 241 / 2e-77 AT4G33420 479 / 1e-171 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G003500 [exp] 299 / 2e-100 AT1G05260 291 / 1e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.015G003600 [exp] 299 / 2e-100 AT1G05260 285 / 6e-95 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.012G006800 [exp] 284 / 1e-94 AT1G05260 291 / 2e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 258 / 3e-84 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 256 / 1e-83 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 256 / 1e-83 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 256 / 1e-83 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 256 / 1e-83 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 256 / 1e-83 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.011G027300 [exp] 248 / 2e-80 AT3G01190 407 / 2e-143 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10028688 pacid=23164579 polypeptide=Lus10028688 locus=Lus10028688.g ID=Lus10028688.BGIv1.0 annot-version=v1.0 ATGACTCACCCTCATCATCAACCACCATCACTACTCTTACTTCCCATCACATTACTAGTACTTCTCTTCATGTTCATGTCCATGTCCATGGCCGAGGCTT CTCTGAAGCCGGGCTTCTACAAGTCATCGTGCCCATCGGCTGAGGCCATCGTCAAGAGGGTCGTCACCAGGGCCGTGTCTCGTGATTCAAACCTTGGGGC CGGCATCATCAGGATGTACTTCCACGACTGCTTTATCAGGGGATGTGACGGATCTGTCCTCCTGAAGTCCACTCCGGGAGGTAACCAAACCGAGAGAGAC CATCCGGCCAACAACCCAAGCCTACGAGGATTCGAGGTAATCGACTCGGCCAAATTGGAACTCGAATCGGTCTGCCCAAACACTGTCTCCTGCGCCGACA TTATCGCCTTCGCCGCTCGGGACAGCTCATTCGTCCTCGGACGCATCAACTACGCCGTCCCCGCCGGTCGGCCCGCCGGTGGTCGTGCCGGCCGCTTCTC GTCTTTCGACGACATCGGTACGAACCTCCCGCCTCCGAGCTTCTCGGCAGAGCAATTGGCTCAGAATTTCGCCCGAAAGGGGTTGACCACTGAGGAGATG GTGGTACTCTCCGGTGCCCACTCGATCGGTGTGGCCCACTGCTCGTCATTCGCTAATCGGCTCTACTCATTCAATGGGACCCACCCGCAGGATCCGACGT TGGACTCCACATACGCGACGGAGCTAAAGAGGCGATGCCCGAATGGCGGCGGAAATGCGGTGGTGGACCTTGATTCGACAGCGAATCGTCTAGACAATCG ATATTTCGCCGATCTTAAGAGGTGGAGAGGGATTTTGAGCTCAGACCAGACACTTATGGATAGTACATTGACGAGGAATATAGCGACGAAGTTCGCAAGT GGGAATGGGGGCGCGTGGGCTGGAAGGTACGCCAAGGCGATGGTGAAGATGGGGTCGATTGAGGTCCTTACGGGGAATCAAGGCGAGATTAGGAAAATTT GTAGTGTTGTCAATTGA
AA sequence Show only first row Show all	>Lus10028688 pacid=23164579 polypeptide=Lus10028688 locus=Lus10028688.g ID=Lus10028688.BGIv1.0 annot-version=v1.0 MTHPHHQPPSLLLLPITLLVLLFMFMSMSMAEASLKPGFYKSSCPSAEAIVKRVVTRAVSRDSNLGAGIIRMYFHDCFIRGCDGSVLLKSTPGGNQTERD HPANNPSLRGFEVIDSAKLELESVCPNTVSCADIIAFAARDSSFVLGRINYAVPAGRPAGGRAGRFSSFDDIGTNLPPPSFSAEQLAQNFARKGLTTEEM VVLSGAHSIGVAHCSSFANRLYSFNGTHPQDPTLDSTYATELKRRCPNGGGNAVVDLDSTANRLDNRYFADLKRWRGILSSDQTLMDSTLTRNIATKFAS GNGGAWAGRYAKAMVKMGSIEVLTGNQGEIRKICSVVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11290			Peroxidase superfamily protein...		Lus10028688 [exp]	0	1
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10003048 [exp]	2.6	0.9065
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10009513 [exp]	4.5	0.8935
AT3G46570			Glycosyl hydrolase superfamily...		Lus10032039 [exp]	4.9	0.8563
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10008611 [exp]	6.0	0.9010
AT2G03350			Protein of unknown function, D...		Lus10037126 [exp]	7.9	0.9039
AT5G15290		CASP5	Casparian strip membrane domai...		Lus10015375 [exp]	10.1	0.8768
AT3G57040		ATRR4, ARR9	RESPONSE REGULATOR 4, response...		Lus10039524 [exp]	10.4	0.8645
AT4G09600		GASA3	GAST1 protein homolog 3 (.1)		Lus10025962 [exp]	14.0	0.8847
AT5G35740			Carbohydrate-binding X8 domain...		Lus10012324 [exp]	14.1	0.8671
AT5G47950			HXXXD-type acyl-transferase fa...		Lus10002893 [exp]	16.9	0.8709

Compare expression of checked genes

Lus10028688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.