Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71695 322 / 7e-108 Peroxidase superfamily protein (.1) AT2G18140 179 / 6e-53 Peroxidase superfamily protein (.1) AT4G33420 177 / 4e-52 Peroxidase superfamily protein (.1) AT2G18150 177 / 4e-52 Peroxidase superfamily protein (.1) AT5G15180 174 / 7e-51 Peroxidase superfamily protein (.1) AT5G51890 174 / 8e-51 Peroxidase superfamily protein (.1) AT5G19890 174 / 1e-50 Peroxidase superfamily protein (.1) AT1G05260 172 / 2e-50 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT4G16270 172 / 1e-49 Peroxidase superfamily protein (.1) AT3G49120 170 / 3e-49 PRX34, PRXCB, ATPERX34, PERX34, ATPCB PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028735 [exp] 504 / 9e-180 AT1G71695 457 / 1e-161 Peroxidase superfamily protein (.1) Lus10032926 [exp] 187 / 9e-56 AT1G05260 292 / 5e-98 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10027989 [exp] 179 / 3e-52 AT5G06720 400 / 1e-139 peroxidase 2 (.1) Lus10010634 [exp] 177 / 9e-52 AT1G44970 449 / 5e-159 Peroxidase superfamily protein (.1) Lus10004163 [exp] 176 / 1e-51 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10015555 [exp] 176 / 2e-51 AT2G41480 432 / 9e-153 Peroxidase superfamily protein (.1) Lus10039681 [exp] 174 / 6e-51 AT4G11290 488 / 3e-175 Peroxidase superfamily protein (.1) Lus10027163 [exp] 174 / 7e-51 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10012540 [exp] 174 / 1e-50 AT5G14130 384 / 5e-134 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G065300 [exp] 344 / 1e-116 AT1G71695 468 / 2e-166 Peroxidase superfamily protein (.1) Potri.005G195600 [exp] 329 / 7e-111 AT1G71695 460 / 4e-163 Peroxidase superfamily protein (.1) Potri.005G195700 [exp] 313 / 2e-104 AT1G71695 453 / 2e-160 Peroxidase superfamily protein (.1) Potri.015G003500 [exp] 196 / 2e-59 AT1G05260 291 / 1e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.012G006800 [exp] 188 / 2e-56 AT1G05260 291 / 2e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.015G003600 [exp] 188 / 4e-56 AT1G05260 285 / 6e-95 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.004G023200 [exp] 181 / 2e-53 AT3G01190 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.005G108900 [exp] 179 / 5e-53 AT5G42180 442 / 2e-157 peroxidase 64, Peroxidase superfamily protein (.1) Potri.001G011500 [exp] 177 / 2e-52 AT5G06720 376 / 6e-131 peroxidase 2 (.1) Potri.005G118700 [exp] 177 / 5e-52 AT5G66390 504 / 0.0 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10028689 pacid=23164596 polypeptide=Lus10028689 locus=Lus10028689.g ID=Lus10028689.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCTTCTTCCCATGTCGTCGCTCTAACGATCGTGTTGTCGGCGGTGTTGTTCGCATCCATGACGACGGCGCAGATTCCGGCGCCGGCCAAAG GAATGTCGTGGACTTTCTACAAGTCCTCCTGCCCCAAGCTCGAGTCCATCATCACTACGCGTCTCAAGGAAGTGTTCAAGAAAGACATTGGCCAGGCCGC AGGCTTGCTCCGCCTCCACTTCCACGACTGCTTCGTCGAGGTACACACAAAATTTCGTCACTTTAAAATCAAGAAATCACGGGTGCGATGGATCGGTATT GCTGACTGGATCGGCAGGTGGGGCCCCCCGCGGGGATCGGCAGGTGGGCCCAGCGCGGAGCAAGGGTCCCCACCTAACTTGAGCCTGAGGAAAGAAGCCT TCCGAATCATCGACGACCTCCGTGCACGTGTCCACAAGGAGTGCGGCCGCGTCGTTTCTTGCTCCGACATTGTCGCTATAGCTGCCCGTGACTCCGTCGT CCTGTCTGGTGGGCCAAACTACCAAGTGGCGTTGGGCCGCCGCGACGGTACAGCGCTAGTAACACAAGACACCACCTTGGCCAATCTCCCGCCACCGTTT GCAACCACGGGAACCATCCTCAGCTCCCTCGCTACCAAGAACCTCAACCCGACCGATGCGGTCGCACTCTCAGGTGCCCACACCATCGGCATTAGCCACT GTTCCTCCTTCACCGACCGCCTCTACCCTAACCAGGACCCCTCCATGGACCAGACCTTCGCCAAAACCCTCAAGGCCACGTGTCCTCAGGCTGCAACGAC CGACAACATCGTCAACCAGGACATCCGGTCGCCGAATGTGTTCGACAACAAGTACTATGTTGACTTGATGAACCGACAGGGTCTGTTCACCTCCGATCAG TTCGAATTTGAAAAAATAACCATAACTAATGGTGTAAAATTGCGAACACTACGATCAGGACCTGTACACCGACTCGCGAACACGTGGGATCGTGACCAGT TTCGCGGTCAACCAGACGCTGTTTTTCGAGAAGTTTGTCGTGGCTATGATCAAGATGGGGCAGATAAGCGTGTTGACCGGTACACAGGGGGAGATCAGAG CGAACTGTTCGCTGACGAACTCCGCGAAGGTAGGAACGTCGTCGTTCTTGGAGGAAGCTGTGGAGGAGGCTGTCGAGCTTTTGGCTGGGATGAGATGAAT GTCTTTAACGGTTATGGATCAGCTGATGGAGAATGA
AA sequence Show only first row Show all	>Lus10028689 pacid=23164596 polypeptide=Lus10028689 locus=Lus10028689.g ID=Lus10028689.BGIv1.0 annot-version=v1.0 MASSSSHVVALTIVLSAVLFASMTTAQIPAPAKGMSWTFYKSSCPKLESIITTRLKEVFKKDIGQAAGLLRLHFHDCFVEVHTKFRHFKIKKSRVRWIGI ADWIGRWGPPRGSAGGPSAEQGSPPNLSLRKEAFRIIDDLRARVHKECGRVVSCSDIVAIAARDSVVLSGGPNYQVALGRRDGTALVTQDTTLANLPPPF ATTGTILSSLATKNLNPTDAVALSGAHTIGISHCSSFTDRLYPNQDPSMDQTFAKTLKATCPQAATTDNIVNQDIRSPNVFDNKYYVDLMNRQGLFTSDQ FEFEKITITNGVKLRTLRSGPVHRLANTWDRDQFRGQPDAVFREVCRGYDQDGADKRVDRYTGGDQSELFADELREGRNVVVLGGSCGGGCRAFGWDEMN VFNGYGSADGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71695			Peroxidase superfamily protein...		Lus10028689 [exp]	0	1
AT1G32160			Protein of unknown function (D...		Lus10035392 [exp]	1.4	0.9897
AT1G72360	AP2_ERF	AtERF73, HRE1	HYPOXIA RESPONSIVE ERF \(ETHYL...		Lus10003601 [exp]	1.7	0.9906
AT1G09090		ATRBOHB-BETA, A...	respiratory burst oxidase homo...		Lus10020644 [exp]	4.6	0.9880
AT5G60335			Thioesterase superfamily prote...		Lus10031971 [exp]	4.9	0.9878
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10027598 [exp]	5.0	0.9863
AT1G71695			Peroxidase superfamily protein...		Lus10028735 [exp]	5.4	0.9740
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10039867 [exp]	5.9	0.9854
AT1G72360	AP2_ERF	AtERF73, HRE1	HYPOXIA RESPONSIVE ERF \(ETHYL...		Lus10008214 [exp]	6.0	0.9856
AT3G50390			Transducin/WD40 repeat-like su...		Lus10016779 [exp]	7.3	0.9827
					Lus10018894 [exp]	8.3	0.9756

Compare expression of checked genes

Lus10028689 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.