Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22790 93 / 3e-23 unknown protein AT1G34010 47 / 2e-06 unknown protein AT1G55475 39 / 0.0004 unknown protein AT3G13480 39 / 0.0007 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028733 [exp] 235 / 5e-79 AT1G22790 192 / 6e-62 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G196300 [exp] 158 / 1e-48 AT1G22790 183 / 1e-58 unknown protein Potri.002G064900 [exp] 154 / 6e-47 AT1G22790 188 / 2e-60 unknown protein Potri.003G221800 [exp] 39 / 0.0007 AT3G13480 99 / 6e-27 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028691 pacid=23164501 polypeptide=Lus10028691 locus=Lus10028691.g ID=Lus10028691.BGIv1.0 annot-version=v1.0 ATGTTATTTGCAGTGGAAGGAGGGGGATTCTTCTCTTCTTCAGCTTCTGGCTATAGTAAGGGCCTGTCCCTTCTCCTGCTGGGTCAGAAGCAAGAAGACA AACCCATGAGAGTTGCGCCGTGGAATCAGTACCAGTTGGTAGACCACGAACCGGACCCTGATCTCCAGCTGGCTTCCTTGAAGAACCGGGCTTCCCGCGG GTGCGCTGCTTCCTTCGCCTGCTTTGGTGGCGCCTCCGCGGGAGTTGATCCCCCCTCGCATCTTAAAGTAGGTCCTGCCACCCACCAGCAGGATGCATTG CCTGATACCCTTGTTGTTGATCACGAGGAAAAAGAAGACATAACAATGACTGAGATCGTTGAAGATGATAAGAAATCGCCAAAAGCATCGCTCAGGAGCA GCTTGAAGAAGTCGTTAAATACTGTTCCTGCCCCGATACAGGATGCTAGTCAGCGTGCTGCTGTGAACGAGCAGGTTAGCAATGTCCCCGGACATAACGA TCGACGGAAAGTACAGTGGACTGATGCTTGTGGCAGCGAGCTTACTGAAATCAGAGAATTTGAGCCCAGGGAAGGACGGTTTACTGGAGGAGCGAGCCAT CGCCATGGCCGCGGTGGAAGAACTACTCGTACCCTCATGTTTATTCTATTGATCTAG
AA sequence Show only first row Show all	>Lus10028691 pacid=23164501 polypeptide=Lus10028691 locus=Lus10028691.g ID=Lus10028691.BGIv1.0 annot-version=v1.0 MLFAVEGGGFFSSSASGYSKGLSLLLLGQKQEDKPMRVAPWNQYQLVDHEPDPDLQLASLKNRASRGCAASFACFGGASAGVDPPSHLKVGPATHQQDAL PDTLVVDHEEKEDITMTEIVEDDKKSPKASLRSSLKKSLNTVPAPIQDASQRAAVNEQVSNVPGHNDRRKVQWTDACGSELTEIREFEPREGRFTGGASH RHGRGGRTTRTLMFILLI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22790			unknown protein		Lus10028691 [exp]	0	1
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10007748 [exp]	2.2	0.8266
AT1G63430			Leucine-rich repeat protein ki...		Lus10008310 [exp]	3.2	0.8191
AT2G37210		LOG3	LONELY GUY 3, lysine decarboxy...		Lus10023190 [exp]	3.9	0.8154
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Lus10006491 [exp]	4.2	0.8097
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Lus10033291 [exp]	4.9	0.8123
AT5G62890			Xanthine/uracil permease famil...		Lus10042138 [exp]	5.5	0.8121
AT4G32720		ATLA1	La protein 1 (.1.2)		Lus10038624 [exp]	9.8	0.7334
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10018674 [exp]	10.9	0.8027
AT1G60990			Glycine cleavage T-protein fam...		Lus10012692 [exp]	15.0	0.8012
AT1G71900			Protein of unknown function (D...		Lus10015480 [exp]	16.7	0.7831

Compare expression of checked genes

Lus10028691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.