Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09830 187 / 1e-60 Uncharacterised conserved protein UCP009193 (.1) AT5G64780 143 / 1e-43 Uncharacterised conserved protein UCP009193 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028732 [exp] 317 / 8e-112 AT4G09830 203 / 6e-67 Uncharacterised conserved protein UCP009193 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G196400 [exp] 228 / 2e-76 AT4G09830 220 / 2e-73 Uncharacterised conserved protein UCP009193 (.1) Potri.002G064800 [exp] 226 / 7e-76 AT4G09830 231 / 1e-77 Uncharacterised conserved protein UCP009193 (.1) Potri.001G003400 [exp] 88 / 2e-22 AT4G09830 99 / 1e-26 Uncharacterised conserved protein UCP009193 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028692 pacid=23164605 polypeptide=Lus10028692 locus=Lus10028692.g ID=Lus10028692.BGIv1.0 annot-version=v1.0 ATGGGGAAGAAGAGGAAATCTGTGGCCACGAGCTTGGACGAGGTGGATCGTACCATGTACACGACCTTCTGCAGCGCTGCAAGCTCCCTTTCACAGCTCT ACACACAGGCGACCAACCACCAGAAACTCACCTTCCAAGCTGGAGAGCGCCACGGCCTTGAAAAGCTCTATCAGTGGATTCGACGGCAGCAGGAGGCAGG TTCGAGGGTCGCAACTGCCGATGTACTCAATTATATTCAGAACGAGATGGATTACACCGGAGAAGAGCAGCCATCGATGTCTCCAAGAGCACAACCCCAA CCGATACAGTCTTTGAACTCCGGCTTCCCGGCTTCTGTTCTCTCATCCGGTTCATCCGGACCCACAGGCCTTAGCCAAGTCAGCCGAGCCTCCGACCATT GCGATCACCAATCCAAGAACTCGGTATTCTCCAATGCCTTGTCCAGCCCCGTCCGCAGAAGCCTCCAAAACTATCACATCGCTCAAGGCGGCCTTTACCA GGCTGGAGGAGGATCACCACCTGGAAATAGTACTCGTAACAACAACGATACGCATTCCAACACCCATTCTAACGATTCCTCCATGGACATCTAG
AA sequence Show only first row Show all	>Lus10028692 pacid=23164605 polypeptide=Lus10028692 locus=Lus10028692.g ID=Lus10028692.BGIv1.0 annot-version=v1.0 MGKKRKSVATSLDEVDRTMYTTFCSAASSLSQLYTQATNHQKLTFQAGERHGLEKLYQWIRRQQEAGSRVATADVLNYIQNEMDYTGEEQPSMSPRAQPQ PIQSLNSGFPASVLSSGSSGPTGLSQVSRASDHCDHQSKNSVFSNALSSPVRRSLQNYHIAQGGLYQAGGGSPPGNSTRNNNDTHSNTHSNDSSMDI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09830			Uncharacterised conserved prot...		Lus10028692 [exp]	0	1
AT3G10300			Calcium-binding EF-hand family...		Lus10042037 [exp]	2.0	0.8803
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10022225 [exp]	2.6	0.8917
AT1G28200		FIP1	FH interacting protein 1 (.1)		Lus10040539 [exp]	3.0	0.8796
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10023471 [exp]	3.2	0.8634
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10020691 [exp]	4.9	0.8490
AT1G33260			Protein kinase superfamily pro...		Lus10019741 [exp]	6.5	0.8365
AT2G43060	bHLH	AtIBH1, bHLH158	ILI1 binding bHLH 1 (.1)		Lus10025511 [exp]	8.5	0.8753
AT5G53750			CBS domain-containing protein ...		Lus10029665 [exp]	8.8	0.8557
AT3G24040			Core-2/I-branching beta-1,6-N-...		Lus10011765 [exp]	10.4	0.8187
AT5G40190			RNA ligase/cyclic nucleotide p...		Lus10039477 [exp]	12.2	0.8444

Compare expression of checked genes

Lus10028692 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.