Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22770 1476 / 0 FB, GI gigantea protein (GI) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028731 [exp] 1746 / 0 AT1G22770 1446 / 0.0 gigantea protein (GI) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G064400 [exp] 1566 / 0 AT1G22770 1626 / 0.0 gigantea protein (GI) (.1) Potri.005G196700 [exp] 1561 / 0 AT1G22770 1609 / 0.0 gigantea protein (GI) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028693 pacid=23164534 polypeptide=Lus10028693 locus=Lus10028693.g ID=Lus10028693.BGIv1.0 annot-version=v1.0 ATGGCTGTTGCTACTTCTTCTGAGAGATGGATTGATGGCCTTCAGTTCTCTTCATTGTTCTGGCCTCCACCACAGGATGTTCAACAGAGAAAGGCACAAG TTACTGCTTACGTCGAGTATTTCGGGCAGTTCACCTCAGATCAGTTTCCTGATGATATAGCTGAGTTGATCCGAAGTCGTTATCCCTCACTGGAAAAACG CCTCTTTGATGATGTTCTCGCCACATTTGTCCTACATCATCCGGAGCACGGTCATGCAGTTGTGCTTCCAATTATTTCATCGTTGATCGACGGTGGACTG GTTTACGATAAGAGCTATCCTCCGTTCGCTTCTTTCATTTCTCTCGTCTGCCCAAGTAGTGAGAATGTGTATTCCGAACAATGGGCTCTAGCGTGTGGCG AGATATTACGAATTCTAACTCATTACAACCGGCCGATTTACAAGAAGCATACCACCGAGCCTGATCGAAGCAGTAGTGGCAGTCATGCAACTACTAGTCA GTCGACGAAGAACGGAGAATCAAGCAGTCCCCCACCGGTGGAAAGGAAACCTTTAAGGCCTCTGTCTCCCTGGATTACAGATATATTGCTCGCTGCACCA CTTGGCATTAGAAGCGACTACTTCCGCTGGTGCAGTGGTGTCATGGGTAAATATGCAGCTGGAGAGCTCAAGCCACCAATCACTGCTGCTTCTCGTGGAT CTGGAAAGCATCCTCAACTCATGCCATCAACTCCAAGGTGGGCTGTCGCCAACGGTGCCGGTGTCATATTAAGTGTCTGTGATGAGGAAGTTGCTCGATA CGAGACCGCAACATTAACGGCAGCTGCCGTCCCTGCTCTTTTACTCCCTCCACCAACTACGTCGTTAGACGAACATTTGGTTGCTGGACTGCCAGCTCTG GAGCCATATGCCCGCTTGTTTCACAGGTATTATGCAATCGCGACTCCAAGTGCTACCCAAAGACTACTACTTGGACTCTTAGAAGCACCGCCTTCATGGG CTCCCGATGCACTTGATGCTGCAGTACAGCTTGTGGAACTCCTCCGAGCAGCTGAAGATTATGCGAATGGCATCCGACTTCCCAGGAATTGGATGCATTT GCATTTCTTGCGGGCAATCGGAACTGCAATGTCCATGGGACCAGGTATAGCTGCTGATGCCGCTGCTGCTCTACTCTTCCGCATCCTGTCACAGCCTGCA TTGCTCTTTCCACCTCTACGCCAAGTTGATGGAGTTGAAGTTCAGCACGAACCTTTAGGTGGATATATATCAAGTTACAGGAAGCAGATAGAAGTGCCAG CAGCTGAAGCAACTATTGAAGCTACTGCCCAGGGAATTGCATCAATGCTTTGTGCACACGGTCCTGAGGTTGAATGGAGAATCTGCACAATATGGGAAGC TGCTTATGGCCTCATCCCTATAGGTTCATCACTTGTCGATCTTCCAGAAATCATCGTCGCAGCTCCATTGCAGCCTCCGACGCTGTCATGGAACTTGTAC ATACCTCTCCTTAAGGTTCTGGAATACCTTCCTCGTGGAAGCCCCTCGGAGGCATGTCTGATGAAGATATTTGTTGCTACTGTTGAAGCAATTCTTCACA GGACATTTCCGCCGGAGTCTTCCGCTGAACAAGTGAGACGGACGAGTTCACCATATGTCATGGGGTCTGCCTCGAAAAACCTTGCAGTAGCGGAGCTTCG TACAATGGTGCATTCGCTGTTTCTAGAATCTTGTGCCAAGCCGGAGCTTGCTTCGCGTTTGCTCTTCGTCGTGCTTACTGTCTGTGTGAGTCATGAAGCT CAGTCAAACGGGAACAAGAGACGAAGAGGCGAAACGAGCCGGCGCAGGGACGAGAGAACCGCCGAGGATTTGGTTCAAGGCGATTCGAAACCTAAAAAGA CTAAGAAGCAAGGTCCGGTCGCAGCGTTCGATTCTTACGTTCTTGCGGCCGTGTGTGCTCTTGCTTGTGAGCTTCAGTTGTTCCCTTTCATTTCGAGGGG TGCTAATCTGTCGTCTCATTCCAAAGACGCAAACGGAGCCAAACCTGCAAAGATGAATGGATCGATGGGTGATTTTCGGAGTACCATTGATTCCGCGATC AATCATACTCGCAGACTCCTCGCGATTCTGGAAGCACTGTTCTCACTGAAGCCATCATCCATAGGGACATCGTGGGGCTATAGTTCGAATGAGATAGTAG CTGCAGCCATGGTTGCTGCTCACGTCTCCGAACTATTCCGAAGGTCGAAGGCTTGCATGCACGCTCTTTCTGTCTTCATTCGTTGCAAGTGGGATAACGA GATTTACAGCCGAGGCTCTTCGCTCCACAACCTTATCGACATTCATAGTAAAGCCGTCGCGTCGATAGTCAACAAGGCCGAGCCTTTGGAAGCGCATTTC ACTCCACCGATTCGGAACGATTCAGTCGACGGTAAAAGGAAAAATCGGAACGGAACCAGTGGTAGCTTTGGAGTAGGACAATCATCTGCTGAGCAATCTG GGGATTCGTCGTCATCTTTACTCGAGATCAAGCTGAAATGCGAAAAAGGCTCGAATCCGGAATCGAGCTCTGGGAAATTGGGAAAGGAAATCGCTAGCTT CTCATTAGAAGCTTCGGATTTGGCCAACTTCTTGACCAAGGATAGGCACATTGGATTCAGTTGCAGCGCGCAAGTTCTGCTAAGATCGGTTCTCGAGGAG AAACAAGAGCTTTGCTTTTCGGTCGTTTTCCTGCTTTGGCATAAATTGATTGCAGCTCCTGATACTCAACCTAGTGCTGAAAGCACTTCTGCCCAACAAG GATGGAGACAGGTGGTCGATGCAATGTGCAACGTCGTTTCAGCTTCGCCAGCAAAAGCAGCTACCGCAGTCGTTCTTCAGGCGGATAGGGAGTTGCAACC TTGGATTGCTAAAGATGATGATCAAAGTCAGAAGATATGGAGAATCAATCAGCGGATAGTAAAGCTGATTGTCGAGCTTATGCGAAACCACGACACCCCT GAGTCATTGGTCATACTAGCAAGTGCCTCGGATCTACTGCTACGTGCTACGGATGGAATGCTTGTCGATGGAGAAGCATGCACTTTGCCCCAACTAGAGT TGCTAGAAGCAACAGCTAGAGCTGTTCGGCCGGTGGTGAACTGGGGAGAAACCGGATTCGCTATTGCTGATGGCCTTTCCAATCTTCTTAAGGTAAATAG AGAACTCTCCGGTTCATATGAAGCGTCACGTGAACGGTATTATGCCATCGCGACACCAAGTGCTACCCAAAGACTACTACTTGGACTCTTAGAAGCACCG CCTTCATGGGCTCCCGATGCACTTGATGCTGCAGTACAGCTTGTGGAACTCCTCCGAGCAGCTGAAGATTATGCGAATGGCATCCGACTTCCCAGGAATT GGATGCATTTGCATTTCTTGCGGGCAATCGGAACTGCAATGTCCATGGGACCAGGTATAGCTGCTGATGCCGCTGCTGCTCTACTCTTTCGCATTCTATC ACAGCCTGCATTGCTCTTTCCACCACTACGCCAAGTTGATGGAGTTGAAGTACAGCATGAACCTTTAGGTGGATATATATCAAGTTACAGGAAGCAGATA GAAGTGCCAGCAGCTGAAGCAACTATTGAAGCTACTGCCCAGGGAATTGCATCGATGCTTTGTGCACACGGTCCCGAGGTTGAGTGGAGAATCTGCACAA TATGGGAAGCTGCTTATGGCCTCATCCCTATAGGTTCGTCACTCGTCGATCTTCCAGAAATCATCGTTGCAGCTCCATTGCAGCCTCCGACGCTGTCATG GAACTTGTACATACCTCTCCTTAAGGTTCTGGAATACCTTCCTCGTGGAAGCCCCTCGGAGGCATGTCTGATGAAGATATTCGTTGCTACTGTTGAAGCA ATTCTTCAGAGGACATTTCCACCGGAGTCTTCGGCTGAACAAGTGAGACGGACGAGTTCACCATACGTCATGGGGTCTGCCTCGAAAAACCTTGCAGTAG CGGAGCTTCGTACAATGGTGCATTCGCTGTTTCTAGAATCTTGTGCCAAGCCGGAGCTTGCTTCGCGTTTGCTCTTCGTCGTGCTTACTGTCTGTGTGAG TCATGAAGCTCAGTCAAATGGGAACAAGAGACGAAGAGGCGAAACGAGCCGGCGCAGGGACGAGAGAACCGCCGAGGATTTGGTTCAAGGCGATTCGAAA CCGAAAAAGACGAAGAAGCAAGGTCCGGTCGCAGCGTTCGATTCTTACGTTCTTGCGGCTGTGTGTGCTCTTGCTTGTGAGCTTCAGTTGTTCCCTTTCA TTTCGAGGGGTGCTAATCTGTCGTCTCATTCCAAAGACGCAAACGGAGCCAAACCTGCAAAGATGAATGGATCCATGGGTGATTTTCGGAGTAGCATTGA TTCAGCGATCAATCATACACGCAGGCTCCTCGCGATTCTGGAAGCACTGTTCTCACTGAAGCCATCATCCATAGGGACATCGTGGGGCTATAGTTCGAAT GAGATAGTAGCTGCAGCCATGGTTGCTGCTCACGTCTCCGAACTATTCCGAAGGTCGAAGGCTTGCATGCACGCTCTTTCTGTCTTCATTCGTTGCAAGT GGGATAACGAGATTTACAGCCGAGGCTCTTCGCTATACAACCTTATCGACATTCATAGTAAAGCCGTCGCGTCGATAGTCAACAAGGCTGAGCCTTTGGA AGTGCATTTCACTCCACCGATTCGGAACGATTCACTCGAAGGCAAAAGGCAAAACCGAAACGGAACCGGTGGTAGCTTTGGATCAGGACAATCATCTGCT GAGCAATCTGGGGATTCGTCCTCGTCATCTTTACTCGAGATCAAACTGAAATGCGAAAAAGGCTCGAATCTGGAATCGAGCTCCGGGAAATTGGGGAAGG GAATTGCTAGCTTCTCATTAGAAGCTTCGGATTTGGCCAACTTCTTGACCAAGGATAGGCACATTGGATTCAGTTGCAGCGCGCAAGTTCTGCTGAGATC CGTTCTCGAGGAGAAACAAGAGCTTTGCTTTTCGGTCGTTTTCCTGCTTTGGCATAAATTGATTGCAGCTCCTGATACTCAACCTAGTGCTGAAAGCACT TCTGCCCAACAAGGATGGAGACAGGTGGTCGATGCAATGTGCAACGTCGTTTCAGCTTCGCCAGCAAAAGCAGCTACCGCAGTCGTTCTTCAGGCGGATA GGGAGTTGCAACCTTGGATTGCTAAAGATGATGATCAAAGTCAGAAGATATGGAGAATCAATCAGCGGATAGTAAAGCTGATTGTCGAGCTTATGCGAAA CCACGACACGCCTGAGTCATTGGTCATACTAGCAAGTGCCTCGGATCTACTGCTACGTGCTACGGATGGAATGCTTGTCGATGGAGAAGCATGCACTTTG CCCCAACTAGAGTTGCTAGAAGCAACAGCTAGAGCTGTTCGGCCGGTGGTGAACTGGGGAGAAACCGGATTCGCTATTGCTGATGGCCTTTCCAATCTTC TTAAGTGTCGTTTACCAGCCACCGTTCGATGCCTTTCGCACCCGAGCGCTCACGTACGAGCTCTGAGCCTGTCGGTGCTGCGTGACATCCTCCACAACGC ATCGATAAAAACCGCTCACAAGCAAGTGGACAAGAACGGGACCAACGGCCGATCCTCATACCAGTACTTCAACGTGGACGTGATCGACTGGCAAGCCGAC ATCGAGAAGTGCCTAGCATGGGAAGCTCACAGCCAGCTGGCAAGAGGGACCCCCATCAACTTCCTCGACACAGCCGCCAGGGAACTAGGCTGCACCATTT CCGTCTGA
AA sequence Show only first row Show all	>Lus10028693 pacid=23164534 polypeptide=Lus10028693 locus=Lus10028693.g ID=Lus10028693.BGIv1.0 annot-version=v1.0 MAVATSSERWIDGLQFSSLFWPPPQDVQQRKAQVTAYVEYFGQFTSDQFPDDIAELIRSRYPSLEKRLFDDVLATFVLHHPEHGHAVVLPIISSLIDGGL VYDKSYPPFASFISLVCPSSENVYSEQWALACGEILRILTHYNRPIYKKHTTEPDRSSSGSHATTSQSTKNGESSSPPPVERKPLRPLSPWITDILLAAP LGIRSDYFRWCSGVMGKYAAGELKPPITAASRGSGKHPQLMPSTPRWAVANGAGVILSVCDEEVARYETATLTAAAVPALLLPPPTTSLDEHLVAGLPAL EPYARLFHRYYAIATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLRAAEDYANGIRLPRNWMHLHFLRAIGTAMSMGPGIAADAAAALLFRILSQPA LLFPPLRQVDGVEVQHEPLGGYISSYRKQIEVPAAEATIEATAQGIASMLCAHGPEVEWRICTIWEAAYGLIPIGSSLVDLPEIIVAAPLQPPTLSWNLY IPLLKVLEYLPRGSPSEACLMKIFVATVEAILHRTFPPESSAEQVRRTSSPYVMGSASKNLAVAELRTMVHSLFLESCAKPELASRLLFVVLTVCVSHEA QSNGNKRRRGETSRRRDERTAEDLVQGDSKPKKTKKQGPVAAFDSYVLAAVCALACELQLFPFISRGANLSSHSKDANGAKPAKMNGSMGDFRSTIDSAI NHTRRLLAILEALFSLKPSSIGTSWGYSSNEIVAAAMVAAHVSELFRRSKACMHALSVFIRCKWDNEIYSRGSSLHNLIDIHSKAVASIVNKAEPLEAHF TPPIRNDSVDGKRKNRNGTSGSFGVGQSSAEQSGDSSSSLLEIKLKCEKGSNPESSSGKLGKEIASFSLEASDLANFLTKDRHIGFSCSAQVLLRSVLEE KQELCFSVVFLLWHKLIAAPDTQPSAESTSAQQGWRQVVDAMCNVVSASPAKAATAVVLQADRELQPWIAKDDDQSQKIWRINQRIVKLIVELMRNHDTP ESLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAVRPVVNWGETGFAIADGLSNLLKVNRELSGSYEASRERYYAIATPSATQRLLLGLLEAP PSWAPDALDAAVQLVELLRAAEDYANGIRLPRNWMHLHFLRAIGTAMSMGPGIAADAAAALLFRILSQPALLFPPLRQVDGVEVQHEPLGGYISSYRKQI EVPAAEATIEATAQGIASMLCAHGPEVEWRICTIWEAAYGLIPIGSSLVDLPEIIVAAPLQPPTLSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVEA ILQRTFPPESSAEQVRRTSSPYVMGSASKNLAVAELRTMVHSLFLESCAKPELASRLLFVVLTVCVSHEAQSNGNKRRRGETSRRRDERTAEDLVQGDSK PKKTKKQGPVAAFDSYVLAAVCALACELQLFPFISRGANLSSHSKDANGAKPAKMNGSMGDFRSSIDSAINHTRRLLAILEALFSLKPSSIGTSWGYSSN EIVAAAMVAAHVSELFRRSKACMHALSVFIRCKWDNEIYSRGSSLYNLIDIHSKAVASIVNKAEPLEVHFTPPIRNDSLEGKRQNRNGTGGSFGSGQSSA EQSGDSSSSSLLEIKLKCEKGSNLESSSGKLGKGIASFSLEASDLANFLTKDRHIGFSCSAQVLLRSVLEEKQELCFSVVFLLWHKLIAAPDTQPSAEST SAQQGWRQVVDAMCNVVSASPAKAATAVVLQADRELQPWIAKDDDQSQKIWRINQRIVKLIVELMRNHDTPESLVILASASDLLLRATDGMLVDGEACTL PQLELLEATARAVRPVVNWGETGFAIADGLSNLLKCRLPATVRCLSHPSAHVRALSLSVLRDILHNASIKTAHKQVDKNGTNGRSSYQYFNVDVIDWQAD IEKCLAWEAHSQLARGTPINFLDTAARELGCTISV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22770		FB, GI	gigantea protein (GI) (.1)		Lus10028693 [exp]	0	1
AT1G30280			Chaperone DnaJ-domain superfam...		Lus10036149 [exp]	1.4	0.8520
AT1G22770		FB, GI	gigantea protein (GI) (.1)		Lus10028731 [exp]	3.2	0.8200
AT2G20050			protein serine/threonine phosp...		Lus10012976 [exp]	3.7	0.8424
AT3G01100		ATHYP1, HYP1	ARABIDOPSIS THALIANA HYPOTHETI...		Lus10005223 [exp]	7.7	0.7961
AT2G20050			protein serine/threonine phosp...		Lus10034955 [exp]	11.1	0.8234
AT5G47900			Protein of unknown function (D...		Lus10019798 [exp]	12.0	0.7958
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10013237 [exp]	14.8	0.7906
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10030757 [exp]	15.8	0.7879
AT1G08420		BSL2	BRI1 suppressor 1 (BSU1)-like ...		Lus10013357 [exp]	17.8	0.8159
AT2G45910			U-box domain-containing protei...		Lus10040825 [exp]	21.4	0.7888

Compare expression of checked genes

Lus10028693 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.