Plant FIBer expression Database

Lus10028694 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G71696 540 / 0 SOL1.4, SOL1.3, SOL1.2, S SUPPRESSOR OF LLP1 1, carboxypeptidase D, putative (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028730
[exp]
756 / 0 AT1G71696 605 / 0.0 SUPPRESSOR OF LLP1 1, carboxypeptidase D, putative (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G197000
[exp]
582 / 0 AT1G71696 635 / 0.0 SUPPRESSOR OF LLP1 1, carboxypeptidase D, putative (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0035 Peptidase_MH PF00246 Peptidase_M14 Zinc carboxypeptidase
Representative CDS sequence
>Lus10028694 pacid=23164473 polypeptide=Lus10028694 locus=Lus10028694.g ID=Lus10028694.BGIv1.0 annot-version=v1.0
ATGGCTTCCCTCCCCAATCGAAATCGCGACGTCTCAACACCAATCGCAACCGTTGCCATCACCAACTCCTCGACGTTAAAGCCACCACCGTCGGTGCCCT
TGCAATCGCAAGCCATCTCCGCGAGCAAACATCAACGACCAGCGGCCTCAACTCACATAGCCCCATCCATGGTACTCTCCATTGTCACCAACCGCTATTC
AACCCCAACACCAGAGGAGGACATCATTTTTGAGCCAGATCTCATCTTCGGCACAACAACCAGTCAGCTCCGAGCGACTGGGGTTCTCGGGGATCAGTAT
CGGAGAGAGTGTGAATGGAGTTCCACTGGTAATACTTTTGCTGAATGGGTAATAGAAATTTCGGACAAGCCCGGGGAAGAAGAGGCTGAACCTGCATTCA
AGTACATTGGCAATGTTCACGGGGATGAACCTGTTGGGCGTGAACTTCTGATTCGTTTAGCTAACTGGATATGCGACAACCATGTGAAGGATCCCCTGGC
AAGATCAATTGTGGAAAATATTCACCTGCATATTCTTCCATCAATAAATCCTGATGGTTTTGCATTACAGAGGCGTGGTAATGCAAAGAATATTGATTTG
AATCGTGACTTCCCTGACCAGTTCTTTCCTTTAAATGATGATTTACTTGCACGTCAACCTGAAACTACAGCAGTCATGAAATGGTTAGGAGACATACGTT
TCACAGGTTCTGCAACTTTGCATGGGGGTGCTCTTGTTGCAAATTATCCATGGGATGGTACCACTGATGGAAGGAGACATTATTATTCATGCCCTGATGA
TGATACGTTCCGGTTCCTGGCGAGCACTTACAGTCAGTCTCACCGCAACATGTCTTTGAGCACCGAGTTCCCAGGGGGCATAACAAATGGAGCATTTTGG
TATCCGATATATGGTGCAATGCAAGACTGGAACTACATACATGCTGGATGTTTCGAGTTGACCTTGGAAGTCAGCGATGATAAATGGCCTAGTATCGATG
AGATTCCTACAATTTGGGAGTACAACAGAATGAGTTTACTGAACCTTGCAGCTTCAGTTTTGAAGACAGGAGTGCATGGGAGGATATTTGCATCAGATAC
CGGAACTCCTCTGCCTGGATTTATCACAATCAAGGGAATAAACTACACGGTTAAAGCTAGCAGAGCATTCGGAGACTATCATCGCCTGCTTGTGCCAGGA
GAGAGATTTGAAGTTATTGCCAGTATGCCGGGGTACAAGACAAAGACAACAACCATATCACTAGGAGAGGCAGCCATGGCTGCTGATTTCATCCTGGATC
CAGAGGTTACGGCCGGACATTACTTACAGAGAATGTATAGTGGCTGCGATTGCAGTGGGAGCAGTAGAAGGTTCAGCCTCGAAATGTTTTGGACACTTCA
CCTCGAGGTTTATGTAGTGGTAATCATATTGTTCCTCTGGTTTCTGTTAAGGCGGAGAATGAAATCGAGCCCCTTGATCGACAAGCAAGCTGCAAGAAGT
TCACTTCCTCCCTGA
AA sequence
>Lus10028694 pacid=23164473 polypeptide=Lus10028694 locus=Lus10028694.g ID=Lus10028694.BGIv1.0 annot-version=v1.0
MASLPNRNRDVSTPIATVAITNSSTLKPPPSVPLQSQAISASKHQRPAASTHIAPSMVLSIVTNRYSTPTPEEDIIFEPDLIFGTTTSQLRATGVLGDQY
RRECEWSSTGNTFAEWVIEISDKPGEEEAEPAFKYIGNVHGDEPVGRELLIRLANWICDNHVKDPLARSIVENIHLHILPSINPDGFALQRRGNAKNIDL
NRDFPDQFFPLNDDLLARQPETTAVMKWLGDIRFTGSATLHGGALVANYPWDGTTDGRRHYYSCPDDDTFRFLASTYSQSHRNMSLSTEFPGGITNGAFW
YPIYGAMQDWNYIHAGCFELTLEVSDDKWPSIDEIPTIWEYNRMSLLNLAASVLKTGVHGRIFASDTGTPLPGFITIKGINYTVKASRAFGDYHRLLVPG
ERFEVIASMPGYKTKTTTISLGEAAMAADFILDPEVTAGHYLQRMYSGCDCSGSSRRFSLEMFWTLHLEVYVVVIILFLWFLLRRRMKSSPLIDKQAARS
SLPP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G71696 SOL1.4, SOL1.3,... SUPPRESSOR OF LLP1 1, carboxyp... Lus10028694
[exp]
0 1
AT3G14630 CYP72A9 "cytochrome P450, family 72, s... Lus10017775
[exp]
2.0 0.9744
AT2G18670 RING/U-box superfamily protein... Lus10015506
[exp]
6.2 0.9698
AT5G47730 Sec14p-like phosphatidylinosit... Lus10039106
[exp]
9.1 0.9380
AT3G23250 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) Lus10033889
[exp]
9.5 0.9683
AT5G45340 CYP707A3 "cytochrome P450, family 707, ... Lus10033308
[exp]
11.6 0.9617
AT1G15170 MATE efflux family protein (.1... Lus10028540
[exp]
14.3 0.9616
AT1G11320 unknown protein Lus10017280
[exp]
16.0 0.9497
AT4G02380 SAG21, ATLEA5 Arabidopsis thaliana late embr... Lus10008170
[exp]
17.5 0.9492
AT4G12080 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localize... Lus10003371
[exp]
17.9 0.9529
AT4G13420 HAK5, ATHAK5 high affinity K+ transporter 5... Lus10025493
[exp]
19.1 0.9576

Lus10028694 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.