Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34060 435 / 7e-150 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G34040 408 / 3e-139 ATMEPCT Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G23320 232 / 1e-71 TAR1 tryptophan aminotransferase related 1 (.1) AT4G24670 225 / 2e-68 TAR2 tryptophan aminotransferase related 2 (.1.2) AT1G70560 221 / 3e-67 CKRC1, WEI8, TAA1, sav3 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007085 [exp] 776 / 0 AT1G34060 456 / 5e-158 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10006199 [exp] 226 / 1e-69 AT1G70560 405 / 6e-141 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Lus10039944 [exp] 226 / 9e-69 AT4G24670 489 / 5e-172 tryptophan aminotransferase related 2 (.1.2) Lus10036846 [exp] 222 / 9e-68 AT1G70560 415 / 4e-144 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Lus10027678 [exp] 218 / 1e-66 AT4G24670 449 / 7e-158 tryptophan aminotransferase related 2 (.1.2) Lus10018088 [exp] 194 / 3e-54 AT1G60780 632 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10042084 [exp] 139 / 3e-38 AT4G24670 190 / 5e-60 tryptophan aminotransferase related 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G064000 [exp] 468 / 5e-163 AT1G34060 514 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G063800 [exp] 463 / 8e-161 AT1G34060 472 / 1e-164 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.010G044500 [exp] 244 / 2e-76 AT1G70560 504 / 4e-179 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Potri.008G187800 [exp] 243 / 1e-75 AT1G70560 477 / 1e-168 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Potri.012G083300 [exp] 227 / 5e-69 AT4G24670 489 / 1e-171 tryptophan aminotransferase related 2 (.1.2) Potri.T125108 [exp] 226 / 9e-69 AT4G24670 487 / 7e-171 tryptophan aminotransferase related 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF04864 [flax] [poplar] Alliinase_C Allinase CL0001 [flax] [poplar] EGF PF04863 [flax] [poplar] EGF_alliinase Alliinase EGF-like domain
Representative CDS sequence Show only first row Show all	>Lus10028695 pacid=23164462 polypeptide=Lus10028695 locus=Lus10028695.g ID=Lus10028695.BGIv1.0 annot-version=v1.0 ATGAACTTTTCGTTAATTGGGTACAACTTCTATTTCGCCGGAGGTGGAGGGCTGAGCTGGAGCCGGGGAGCGGCGGAGGAAGCAGAGTTGGTGGCGGCCA TCTCATGCTCCGGCCACGGTAGAGCTTATCTCGACGGCGAGATCTCCGGCGACGGTGGTTTGCCGGGTTGTGAGTGTAACACTTGCTACGGTGGGAGTGA TTGCTCTCAGTTTGATCCTTCTTGCTCTGCTGATGCCGATGGGGGAAATCCCCTGTTTCTTGAACCATTCTGGATGCAACGCGCCGCCGCCAGCGCTGTC CTCGTCGCCGGACACCACCGGATGGGCTACTCCTACAACGACTCGACTTTCATCTCGTATGAGCTCGTGCGGCACATCCGAAAGCTCCACTCCATCGTCG GGAACGCCATCACCGACAACAAATCCATCATCTTCGGCGCCGGATCCACCCAGCTCCTCAACGCCGCCGTCCACGCCCTAAGCTCCTCCTCCTCCTCCTC CTTCGCCGCCGGCGTAGTAGCCTCCCCGCCGTTCTACCCCGTTTACGAATTACAAACTGAATTCTTCGATTCCAAGGATTTCCAATTCCAAGGAGACGCG TCGACTCTGCTCCGAAACAAATCGAGCAGTAGTAATCCTGATGGCAAGAGGATTATTGAATTCGTCACGTCGCCCAACAATCCAGACGGGAAATTAAACA AGGCTATTCTCCAAGGACAGAATCACAAGTCGATTTACGACAGGGCGTATTTCTGGCCACATTTCACTCCGATAGCGATTCCAACGGCGACAGATGACAA CCCCGACGTGGTGATTTTCACATTGTCGAAGCTCACCGGCCACGCCGGGTCGCGATTCGGGTGGGCGATCGTGAAGGACGAGGAGGTGTACGGTGAAATG GTAAAGTACTTACAATTGAACACGATGGGTGACTCGCGAGAGACCCAACTGAGAGCTCTGAAGCTGCTGAAGACTGTGATCGGCGGCAGAGTCTCTGTCT CCGGCGATGAGGGGTCGTCGATCTTTGAGTTTGGCTACAAAACGATGAAGAAACGGTGGGAAGGGCTCAAGAGCGTTGTCGAAACATCGAAACGTTTCTC ACTTCAGGACGTTTCTTCTCAGTACTGCCGTTTCTTTGGTAAAGAAAGAGAGGCTTCCCCGGCTTATGCATGGCTGAAATGCGAAGGAAAGGAAGACATT GGTTCATCGTGTTATGAGGTGCTCAGACGAGGAGGGATAATAGGGAGGGAAGGAATAAAATTTTCGGCCTCCGATCGATACGTAAGGCTAAGCCTCATTA AAACCGAGGACGATTTCAATATGCTTCTACACAAACTTCGCATCTTGATCTCCTCCGAATCACAACCGGAACACGATACATACGTTCTTAACGATGTCGA CGGAAGCCGCCAAGCATTTCCAAGAAAAATGTGA
AA sequence Show only first row Show all	>Lus10028695 pacid=23164462 polypeptide=Lus10028695 locus=Lus10028695.g ID=Lus10028695.BGIv1.0 annot-version=v1.0 MNFSLIGYNFYFAGGGGLSWSRGAAEEAELVAAISCSGHGRAYLDGEISGDGGLPGCECNTCYGGSDCSQFDPSCSADADGGNPLFLEPFWMQRAAASAV LVAGHHRMGYSYNDSTFISYELVRHIRKLHSIVGNAITDNKSIIFGAGSTQLLNAAVHALSSSSSSSFAAGVVASPPFYPVYELQTEFFDSKDFQFQGDA STLLRNKSSSSNPDGKRIIEFVTSPNNPDGKLNKAILQGQNHKSIYDRAYFWPHFTPIAIPTATDDNPDVVIFTLSKLTGHAGSRFGWAIVKDEEVYGEM VKYLQLNTMGDSRETQLRALKLLKTVIGGRVSVSGDEGSSIFEFGYKTMKKRWEGLKSVVETSKRFSLQDVSSQYCRFFGKEREASPAYAWLKCEGKEDI GSSCYEVLRRGGIIGREGIKFSASDRYVRLSLIKTEDDFNMLLHKLRILISSESQPEHDTYVLNDVDGSRQAFPRKM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34060			Pyridoxal phosphate (PLP)-depe...		Lus10028695 [exp]	0	1
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10018626 [exp]	1.0	0.9476
AT5G49740		ATFRO7, FRO7	ferric reduction oxidase 7 (.1...		Lus10012160 [exp]	2.0	0.9387
AT3G57680			Peptidase S41 family protein (...		Lus10040494 [exp]	2.2	0.9335
AT5G14860			UDP-Glycosyltransferase superf...		Lus10022222 [exp]	2.8	0.9344
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10000231 [exp]	3.7	0.9179
AT5G24860		ATFPF1, FPF1	ARABIDOPSIS FLOWERING PROMOTIN...		Lus10026956 [exp]	4.1	0.9011
AT3G18430			Calcium-binding EF-hand family...		Lus10042708 [exp]	4.6	0.9361
AT5G10770			Eukaryotic aspartyl protease f...		Lus10020100 [exp]	7.3	0.9144
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10001887 [exp]	9.2	0.8914
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10042875 [exp]	9.6	0.8799

Compare expression of checked genes

Lus10028695 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.