Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09760 463 / 1e-164 Protein kinase superfamily protein (.1.2.3) AT1G74320 455 / 5e-161 Protein kinase superfamily protein (.1) AT1G71697 454 / 6e-161 ATCK1 choline kinase 1 (.1) AT2G26830 178 / 1e-52 EMB1187 embryo defective 1187, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028728 [exp] 733 / 0 AT4G09760 469 / 1e-166 Protein kinase superfamily protein (.1.2.3) Lus10026145 [exp] 442 / 3e-153 AT1G74320 499 / 6e-176 Protein kinase superfamily protein (.1) Lus10024127 [exp] 427 / 2e-148 AT1G74320 484 / 4e-171 Protein kinase superfamily protein (.1) Lus10005386 [exp] 379 / 5e-130 AT1G74320 426 / 1e-148 Protein kinase superfamily protein (.1) Lus10019424 [exp] 165 / 3e-45 AT2G26830 471 / 1e-161 embryo defective 1187, Protein kinase superfamily protein (.1) Lus10008675 [exp] 87 / 7e-20 AT1G74320 91 / 2e-22 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G197500 [exp] 524 / 0 AT4G09760 486 / 1e-172 Protein kinase superfamily protein (.1.2.3) Potri.002G063700 [exp] 518 / 0 AT4G09760 481 / 2e-171 Protein kinase superfamily protein (.1.2.3) Potri.003G193000 [exp] 479 / 1e-170 AT1G74320 523 / 0.0 Protein kinase superfamily protein (.1) Potri.001G032000 [exp] 474 / 2e-168 AT1G74320 531 / 0.0 Protein kinase superfamily protein (.1) Potri.006G120700 [exp] 175 / 2e-51 AT2G26830 524 / 0.0 embryo defective 1187, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01633 [flax] [poplar] Choline_kinase Choline/ethanolamine kinase
Representative CDS sequence Show only first row Show all	>Lus10028696 pacid=23164573 polypeptide=Lus10028696 locus=Lus10028696.g ID=Lus10028696.BGIv1.0 annot-version=v1.0 ATGGCAATCAAGACAAATGGTTTCATAGAGGGGATCTTCCCAGAAGAGCTGAAGAGGGTTCTGAAATCTCTTGCCATGGAATGGGGAGATGTGGTTGAGG ACATGAAAGCTCTGCAGGTCATACCGATGAAGGGTGCTATGACTAATGAGGTTTACCAGATAAACTGGCCCAGAAAGGAAGAAGGATTGTTCAACAGGAA GGTTCTGATCAGGATCTATGGCGAAGGGGTTGACTTGTTCTTCAATAGAGATGTTGAAGTTGAGACCTTTGAGTGCATGTCTAATCATGGTCAAGGTCCT AGGCTTCTTGGCCGGTTCCCTGAAGGGAGGGTTGAAGAGTTCATCCATGCTAGGACACTTTCAGCTGGTGATCTTAGGGTCCCTGAGATTTCTGCTTTGA TTGCAGCTAAGATGAAGGAGTTTCATAATCTTGACATGCCTGGTCCAAGAACTGTCACACTTTGGAATAGAATGAGGGACTGGTTGCCTGAAGCTAAAAG GTTATGCACTGCAAAAGATGCAAAGGAGTTCAAGCTCGATGTTATCAAAGACGAGATTGATATGCTGGAGAAGGCGATGTCGAAAAGCTGCTGCCAAGAT ATCGCATTCTGTCACAACGATTTGCAGTATGGTAACATAATGATGGATGAAGAGACCAGAGCCATCACCTTGATTGATTACGAGTACGCGAGCTACAACC CTGTTGCTTACGACTTGGCGAACCACTTCAGCGAAATGGCCGCTGATTACCATTCCGACACTCCACATGTTCTTGATTATGGCAAATACCCAGGACTCGA GGAGCGATGCAGATTCATCCGCGCTTACCTCGATGAGCCAACCGAGGAGGAAGTGATGCAGCTAGCTGAGTGTGTGGAGAAGTACACCCTTGCCAACCAT CTTTTCTGGGGTTTATGGGGCATAATCTCGAGGTATGTGAACCAGATTGATTTCGACTACTTGGAGTATGCGAGGCAGAGGTTCGACCAGTACTGGTTGA GGAAGCCGGAAATTCTGGGTTCATTAGAAGTGAAGAACTGTTCGTGTGGGAATGGAATTGGAAAGAGGGAAGGAGCTTGA
AA sequence Show only first row Show all	>Lus10028696 pacid=23164573 polypeptide=Lus10028696 locus=Lus10028696.g ID=Lus10028696.BGIv1.0 annot-version=v1.0 MAIKTNGFIEGIFPEELKRVLKSLAMEWGDVVEDMKALQVIPMKGAMTNEVYQINWPRKEEGLFNRKVLIRIYGEGVDLFFNRDVEVETFECMSNHGQGP RLLGRFPEGRVEEFIHARTLSAGDLRVPEISALIAAKMKEFHNLDMPGPRTVTLWNRMRDWLPEAKRLCTAKDAKEFKLDVIKDEIDMLEKAMSKSCCQD IAFCHNDLQYGNIMMDEETRAITLIDYEYASYNPVAYDLANHFSEMAADYHSDTPHVLDYGKYPGLEERCRFIRAYLDEPTEEEVMQLAECVEKYTLANH LFWGLWGIISRYVNQIDFDYLEYARQRFDQYWLRKPEILGSLEVKNCSCGNGIGKREGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09760			Protein kinase superfamily pro...		Lus10028696 [exp]	0	1
AT4G09760			Protein kinase superfamily pro...		Lus10028728 [exp]	1.0	0.9239
AT2G28305		ATLOG1	LONELY GUY 1, Putative lysine ...		Lus10021462 [exp]	3.7	0.8548
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Lus10003178 [exp]	5.9	0.8273
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003454 [exp]	6.3	0.8272
AT3G12660		FLA14	FASCICLIN-like arabinogalactan...		Lus10026107 [exp]	9.6	0.8465
AT1G48300			unknown protein		Lus10009975 [exp]	9.8	0.8113
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10000422 [exp]	10.4	0.8327
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040327 [exp]	14.0	0.8425
AT5G67140			F-box/RNI-like superfamily pro...		Lus10024178 [exp]	14.5	0.7937
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10032292 [exp]	14.5	0.8011

Compare expression of checked genes

Lus10028696 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.