Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71710 636 / 0 DNAse I-like superfamily protein (.1.2) AT1G34120 540 / 0 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3) AT4G18010 417 / 8e-138 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) AT3G63240 294 / 3e-91 DNAse I-like superfamily protein (.1) AT1G05470 290 / 3e-89 CVP2 COTYLEDON VASCULAR PATTERN 2, DNAse I-like superfamily protein (.1) AT2G32010 285 / 2e-87 CVL1 CVP2 like 1 (.1.2) AT5G65090 269 / 9e-83 DER4, MRH3, BST1 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) AT2G37440 266 / 2e-82 DNAse I-like superfamily protein (.1.2) AT5G04980 258 / 5e-79 DNAse I-like superfamily protein (.1.2) AT2G01900 241 / 6e-73 DNAse I-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028727 [exp] 1201 / 0 AT1G71710 674 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10011041 [exp] 429 / 8e-143 AT4G18010 655 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10003010 [exp] 413 / 2e-136 AT4G18010 655 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10040107 [exp] 416 / 5e-134 AT4G18010 638 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10006597 [exp] 295 / 7e-94 AT2G32010 581 / 0.0 CVP2 like 1 (.1.2) Lus10039352 [exp] 296 / 2e-91 AT2G32010 894 / 0.0 CVP2 like 1 (.1.2) Lus10008934 [exp] 266 / 2e-84 AT5G04980 395 / 3e-138 DNAse I-like superfamily protein (.1.2) Lus10006904 [exp] 276 / 4e-84 AT3G63240 711 / 0.0 DNAse I-like superfamily protein (.1) Lus10028884 [exp] 270 / 9e-83 AT5G04980 526 / 0.0 DNAse I-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G197800 [exp] 809 / 0 AT1G71710 658 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.002G063500 [exp] 758 / 0 AT1G71710 631 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.001G145900 [exp] 458 / 1e-153 AT4G18010 615 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Potri.003G088300 [exp] 452 / 2e-151 AT4G18010 615 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Potri.005G212700 [exp] 362 / 2e-117 AT3G63240 778 / 0.0 DNAse I-like superfamily protein (.1) Potri.008G155700 [exp] 357 / 3e-115 AT2G32010 914 / 0.0 CVP2 like 1 (.1.2) Potri.010G084300 [exp] 293 / 1e-90 AT2G32010 865 / 0.0 CVP2 like 1 (.1.2) Potri.002G050000 [exp] 292 / 1e-90 AT3G63240 785 / 0.0 DNAse I-like superfamily protein (.1) Potri.010G247800 [exp] 278 / 5e-86 AT5G04980 552 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.007G090200 [exp] 276 / 3e-84 AT5G65090 671 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10028697 pacid=23164518 polypeptide=Lus10028697 locus=Lus10028697.g ID=Lus10028697.BGIv1.0 annot-version=v1.0 ATGAAGGCCAAGGCAAAGAAGCAGCAGCAGTCCTCCTCAGCTGACGATTCCACCTCCATCAAGTCCCGCTCCAAGCAGAACCCTGAGCTGTTCTGGCCTA GGCTTGTTGTTCGGAAGTGGCTGAACATAGCGGCGAAGGAGTCCGATTACAGCGCAGATACTGAGTCCGACTGTGACTCCTCTTCCTCCGACGGCGGCGG TGAATCCGATTCCGAAGAGATCAGTCCACTCGGGAAGCAGTCTCGATTTAGAGAAGAAGACAACGGTCTTGTTGACGATGCGCTTCCATTTCTGCACAGA CGTAGGAAGTCAGAAACTTTTAGAGCCCAGTACATTAGTCCTAAAGAACTCAGGTCCACTTCTCTCCGAGTTGCTACATGGAATGTTGGAGGCAAAATGC CACCGGATGATCTGGATATTGATGACTGGGTTGATACTGATGAACCTGCAGATATATATGTACTTGGTCTTCAGGAGATTGTACCGTTAAATGCTGGGAA CATCTTTGGCGCTGAAGATAACAGGCCAGCCACAAAGTGGGAAAATATCATACGGGACACTTTAAACAGTATTCGACCCATAAGGACCAAGGTCAAATGC TATAGTGATCCAGTATCTCCATCGAAATTCAATCCGTCTGATGAAGTTCCGGGAGCTGTGGAGGAGATTCTACTAGAGAGTGATAGCGACATTGGAGAGG AAGTCCATCCTATAGATGAAGATCCCATCGATTTCGCTGAAATCAAAGATAGACCGGAAGCTTATCCTTTCGACATGTTACTCGATTCGAACCTTCGCCA CATTACCATTCCGGAAGAGAGCGACTTCCAGAGGCAAGCTTCTCAGAAGTCATTGAATAGATTGAACTGCATTCGCAACGACGACAATGCATCACAAGAT GTGGATGAATCTGGGGTAACACCGCAAGCTAGAAAACTGACCAGAATGCTCAGTGGTTCCGAAAGGATCGGTTTAAGCTGGCCAGAGCCCCAGTTGAACT TGCTGTCTGGACATGTCTTACAAAGACCAGGCTCCTTCAAATCTATAAAATCTCTTTCTGCAACGAAGTCTTTTGAAAGATACAGTTCTTTCAAGTCGGT AGCTAACGATATGCAAACCGGGATCGCTTTGCTTACTGAGATCGACCTCGAATCCCTCCTGAAACGTAAAAGATCATCTTATGTGAGGATAGTTAGTAAG CAAATGGTTGGCATTTTCATCACCGTTTGGGTTCGTAGGCACTTGCGCAAGCATATTCAAAATGTGAAAGTCTCCACTGTTGGCGTTGGTGTTATGGGCT ATATTGGCAACAAGGGATCAGTATCAGTAAGCATGTCGGTATATCAGACGCCATTCTGTTTCGTGTGCACCCACCTGACATCAGGTGAAAAGGAAGGGGA CGAACTCAAAAGAAATGCCGACGTTCACGAGATACACAAACGAACGAATTTTCGCTCCGTTGCAGCTGTCGGTCTTCCTAAGACCATTAAAGATCACGAG AGAATCATATGGTTAGGTGATCTGAATTACCGTATAAACTTGTCGTACGAGAGAACTCGTGAACTTATAGCCCATAAGCAGTTATCAACACTTGCAGAAT ACGACCAGCTGACACGAGAGTTTCGAAAAGGTAGAGTTTTCGACGGATGGCGCGAAGGTAAATTGACCTTCCCACCTACGTACAAGTACGAGTTTAACTC AACCAGATACTGTGGTGAAGATCCCAAGGCTGCAGGGAGGCGTACTCCTGCATGGTGTGACCGAATTCTTTCGCTTGGCAAAGGATTCAAGCTCCTGAGT TACCGAAGAACCGAGCTGAAGCTCTCCGACCATCGACCAGTGACCGCAACATTCATGGTCGAGGTCGAGGTGTTCTGCCCCAGGAGGCTACAACGTGCGC TCACTTACACCGATGCAGAGATCGTGAACAAGGAGATCGAGATCGGACTCGATGTCGGAATGAGCCTCCAGCTAGAGCAGAACTCTTGGTGGGAAGTATG TACAGAAATAAAGGCGTAG
AA sequence Show only first row Show all	>Lus10028697 pacid=23164518 polypeptide=Lus10028697 locus=Lus10028697.g ID=Lus10028697.BGIv1.0 annot-version=v1.0 MKAKAKKQQQSSSADDSTSIKSRSKQNPELFWPRLVVRKWLNIAAKESDYSADTESDCDSSSSDGGGESDSEEISPLGKQSRFREEDNGLVDDALPFLHR RRKSETFRAQYISPKELRSTSLRVATWNVGGKMPPDDLDIDDWVDTDEPADIYVLGLQEIVPLNAGNIFGAEDNRPATKWENIIRDTLNSIRPIRTKVKC YSDPVSPSKFNPSDEVPGAVEEILLESDSDIGEEVHPIDEDPIDFAEIKDRPEAYPFDMLLDSNLRHITIPEESDFQRQASQKSLNRLNCIRNDDNASQD VDESGVTPQARKLTRMLSGSERIGLSWPEPQLNLLSGHVLQRPGSFKSIKSLSATKSFERYSSFKSVANDMQTGIALLTEIDLESLLKRKRSSYVRIVSK QMVGIFITVWVRRHLRKHIQNVKVSTVGVGVMGYIGNKGSVSVSMSVYQTPFCFVCTHLTSGEKEGDELKRNADVHEIHKRTNFRSVAAVGLPKTIKDHE RIIWLGDLNYRINLSYERTRELIAHKQLSTLAEYDQLTREFRKGRVFDGWREGKLTFPPTYKYEFNSTRYCGEDPKAAGRRTPAWCDRILSLGKGFKLLS YRRTELKLSDHRPVTATFMVEVEVFCPRRLQRALTYTDAEIVNKEIEIGLDVGMSLQLEQNSWWEVCTEIKA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71710			DNAse I-like superfamily prote...		Lus10028697 [exp]	0	1
AT3G05640			Protein phosphatase 2C family ...		Lus10037709 [exp]	13.6	0.8710
AT2G16720	MYB	AtY49, AtMYB7	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10033473 [exp]	14.6	0.8708
AT3G05725			Protein of unknown function (D...		Lus10010929 [exp]	15.8	0.8056
AT1G69870		NRT1.7	nitrate transporter 1.7 (.1)		Lus10037221 [exp]	23.7	0.8395
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10009339 [exp]	28.0	0.8167
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10022066 [exp]	38.4	0.8498
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10033392 [exp]	38.7	0.8541
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10042612 [exp]	43.1	0.8388
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Lus10000354 [exp]	45.4	0.8174
AT1G54540			Late embryogenesis abundant (L...		Lus10031888 [exp]	58.0	0.8343

Compare expression of checked genes

Lus10028697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.