Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71720 511 / 1e-178 PDE338 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) AT5G30510 103 / 8e-24 ARRPS1, RPS1 ribosomal protein S1 (.1) AT3G23700 67 / 8e-12 Nucleic acid-binding proteins superfamily (.1) AT5G14580 44 / 0.0003 polyribonucleotide nucleotidyltransferase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028726 [exp] 804 / 0 AT1G71720 506 / 8e-177 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) Lus10017100 [exp] 93 / 4e-20 AT5G30510 590 / 0.0 ribosomal protein S1 (.1) Lus10037822 [exp] 90 / 5e-19 AT5G30510 583 / 0.0 ribosomal protein S1 (.1) Lus10022587 [exp] 75 / 3e-14 AT3G23700 374 / 3e-128 Nucleic acid-binding proteins superfamily (.1) Lus10021484 [exp] 66 / 2e-11 AT3G23700 197 / 4e-60 Nucleic acid-binding proteins superfamily (.1) Lus10008763 [exp] 45 / 0.0002 AT5G14580 1215 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G063400 [exp] 555 / 0 AT1G71720 514 / 2e-179 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) Potri.005G197900 [exp] 550 / 0 AT1G71720 501 / 2e-174 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) Potri.008G101100 [exp] 92 / 6e-20 AT5G30510 615 / 0.0 ribosomal protein S1 (.1) Potri.010G150300 [exp] 89 / 5e-19 AT5G30510 575 / 0.0 ribosomal protein S1 (.1) Potri.014G148500 [exp] 58 / 7e-09 AT3G23700 439 / 2e-153 Nucleic acid-binding proteins superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF00575 [flax] [poplar] S1 S1 RNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10028698 pacid=23164588 polypeptide=Lus10028698 locus=Lus10028698.g ID=Lus10028698.BGIv1.0 annot-version=v1.0 ATGCCACTACTTCAGCACCTTCACCTTCACAATCTCCATCTCCAGCTCCACAATTCTCTCCCGCTTCCATTACAGCTCCCTCGCTCGACTCTTATCAGAA ACAGTCATTTCATCTCCATCTACAATTCCTCAGCTCAGAAGAAGCATCCCCATCTTGCACTCTGCTCCAAAGATGAATCCTTTGAAGAGAGCGACGAGCT CGAGTTGCGGAACAAACCGTCGCCGTCTCCGGTTAGCGACGGCGGCGATTCTCCACCGCCGCCTCTGCCGGAGGAAGTGGATTCCGAGGAGAAGAGGATA AGGGACGAGAAGCTAGCTCCGTTTCTGAAGTTCTTCAAGCCGAGGGACGCGTCAGGGGAGGTAATTGAACACGAAGAGGATGAAATTAGGGATTTGGATG AAAATCTGGATGAAATTAGGGATTCTGCAAATAAAGTCAATGTAGAGTATTACGATCCGAAAGCCGGGGAATTTGTAATCGGGGTAGTGGTTTCGGGGAA CGAGAATAAGCTCGATGTTAACGTAGGTGCTGATCTACTGGGAACAATGCTGAGTAAAGAAGTGATGCCATTGTACAGAAAGGAGATGGATTATCTTCTG TGTGATATGGAGAAGGATTGTGAGGAGTTCTGCGTTGGGGGGAAAGTTGGCATTGTTAAAAATGAGCTTGCTTTGAGCGGTGGTACCGGTCCGGGGAGGC CTGTGGTGGAGAATGGCACTGTGTTGTTTGCTGAGGTTCTGGGGAGGACTTTGAGTGGCCGGCCTTTGCTTTCGACGAGAAGGATGTTTCGGAGGATCGC ATGGACTCGAGCCAGGCAGATAAAGGAACTGAATGAGCCGATTGAGGTGAAAATCACAGAGTGGAATACTGGAGGCCTTCTCACAAGAATAGAGGGATTA CGAGCTTTCCTTCCGAAGATCGAGCTAGTTCAAAGAGTGAACAACTTCAAGGAGTTGAAAGAAAATGTTGGCCGTCGATTGAATGTGCTCATCACGCGGA TAAACGAGAGCAATAACGACCTTATACTGAGCGAGAAGGATGCGTGGGAAATGTTGAATCTTAAGGAAGGGACGCTTCTTGAAGGAACAGTTAAGGCGAT TTTTCCTTACGGAGCGCAAGTTCGAATAGGGGAAAGTAGCAGAAGCGGGCTGTTGCATATCTCGAAGATGAGCAGGAAACGGATCGGTGCTGTGGATGAT GTGCTGAAAATCGATGAGAAGGTGAAAGCCCTCGTCGTAAAGTCAATGTTTACTGGGAAAATATCTCTCAGTACTGCTGACCTTGAAAGTGAGCCTGGAC TGTTCCTATCTGATAAAGAGAGGGTCTTTCTTGAGGCAGAAGCAATGGCTAAAAAGTACAGGCAAAAACTACAAGCTACTACCCAAAAGGGTAAGAAATC AGTAAAACCTCTAACCGGGTCGAGCATGTTTGATCGGGAGGACTCGGTCGTGTACGCGAACTGGAAGTGGTTCAAGTTCGAAAGCGACGTCGAAGGGGAG TGA
AA sequence Show only first row Show all	>Lus10028698 pacid=23164588 polypeptide=Lus10028698 locus=Lus10028698.g ID=Lus10028698.BGIv1.0 annot-version=v1.0 MPLLQHLHLHNLHLQLHNSLPLPLQLPRSTLIRNSHFISIYNSSAQKKHPHLALCSKDESFEESDELELRNKPSPSPVSDGGDSPPPPLPEEVDSEEKRI RDEKLAPFLKFFKPRDASGEVIEHEEDEIRDLDENLDEIRDSANKVNVEYYDPKAGEFVIGVVVSGNENKLDVNVGADLLGTMLSKEVMPLYRKEMDYLL CDMEKDCEEFCVGGKVGIVKNELALSGGTGPGRPVVENGTVLFAEVLGRTLSGRPLLSTRRMFRRIAWTRARQIKELNEPIEVKITEWNTGGLLTRIEGL RAFLPKIELVQRVNNFKELKENVGRRLNVLITRINESNNDLILSEKDAWEMLNLKEGTLLEGTVKAIFPYGAQVRIGESSRSGLLHISKMSRKRIGAVDD VLKIDEKVKALVVKSMFTGKISLSTADLESEPGLFLSDKERVFLEAEAMAKKYRQKLQATTQKGKKSVKPLTGSSMFDREDSVVYANWKWFKFESDVEGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Lus10028698 [exp]	0	1
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Lus10028726 [exp]	1.4	0.9572
AT5G54600			Translation protein SH3-like f...		Lus10038125 [exp]	4.8	0.9575
AT2G21385			unknown protein		Lus10017494 [exp]	7.1	0.9519
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10035036 [exp]	7.7	0.9550
AT3G13120			Ribosomal protein S10p/S20e fa...		Lus10016604 [exp]	7.9	0.9572
AT1G79850		PDE347, CS17, P...	PLASTID RIBOSOMAL SMALL SUBUNI...		Lus10035863 [exp]	9.5	0.9419
AT3G24590		PLSP1	plastidic type i signal peptid...		Lus10023651 [exp]	10.2	0.8895
AT1G62780			unknown protein		Lus10032229 [exp]	13.0	0.9358
AT5G14320		EMB3137	EMBRYO DEFECTIVE 3137, Ribosom...		Lus10018192 [exp]	16.5	0.9409
AT4G21445			unknown protein		Lus10002594 [exp]	17.0	0.9391

Compare expression of checked genes

Lus10028698 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.