Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06740 431 / 4e-142 Concanavalin A-like lectin protein kinase family protein (.1) AT4G04960 339 / 2e-106 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 333 / 3e-104 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 329 / 6e-103 Concanavalin A-like lectin protein kinase family protein (.1) AT5G10530 317 / 1e-98 Concanavalin A-like lectin protein kinase family protein (.1) AT3G08870 313 / 1e-96 Concanavalin A-like lectin protein kinase family protein (.1) AT3G59740 312 / 2e-96 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53380 310 / 3e-95 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 301 / 3e-92 Concanavalin A-like lectin protein kinase family protein (.1) AT5G03140 301 / 5e-92 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009423 [exp] 1246 / 0 AT5G06740 446 / 2e-147 Concanavalin A-like lectin protein kinase family protein (.1) Lus10021060 [exp] 397 / 2e-129 AT5G06740 667 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016257 [exp] 387 / 2e-124 AT5G06740 638 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 356 / 7e-113 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 353 / 6e-112 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004277 [exp] 331 / 1e-103 AT5G10530 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040276 [exp] 331 / 2e-103 AT3G55550 750 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10019923 [exp] 333 / 4e-103 AT3G53380 927 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10026493 [exp] 316 / 2e-97 AT3G53380 872 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G455500 [exp] 849 / 0 AT5G06740 416 / 1e-136 Concanavalin A-like lectin protein kinase family protein (.1) Potri.011G146500 [exp] 827 / 0 AT5G06740 411 / 5e-135 Concanavalin A-like lectin protein kinase family protein (.1) Potri.004G209300 [exp] 598 / 0 AT5G06740 368 / 3e-118 Concanavalin A-like lectin protein kinase family protein (.1) Potri.016G045000 [exp] 436 / 3e-144 AT5G06740 702 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G193000 [exp] 433 / 4e-143 AT5G06740 688 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088680 [exp] 372 / 3e-119 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088600 [exp] 370 / 3e-118 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088400 [exp] 362 / 2e-115 AT2G37710 800 / 0.0 receptor lectin kinase (.1) Potri.006G088900 [exp] 357 / 1e-113 AT2G37710 801 / 0.0 receptor lectin kinase (.1) Potri.018G028800 [exp] 350 / 9e-111 AT5G06740 371 / 1e-119 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10028699 pacid=23164578 polypeptide=Lus10028699 locus=Lus10028699.g ID=Lus10028699.BGIv1.0 annot-version=v1.0 ATGGATCTCCGCCACCGCCGCCGCCGTCATATTCTTCACTTCCTCCTCCTAGTCCTCGCCGGCGCTTCCTCAATCTCACTCACCACATCTCAACAACAAC AGCAAATAATAACTGAAAACCACCGACTCGGCTCACCATTCACCCCGGCCGACTACTCAACCCTCGCCGTCGTCGATCCCGCCACAATCAGCAATCAAGC ACTCCAGGTCACCCCTGACTCCGCCGGCAACTTCACTCTTTCCAACCGCTCCGGTCGCATCCTCTTCAATCAGACCTACAAACTCTGGGACGATGACGGT GGCGCCGGAGATGGTCACCGGACGGCTTCATTCAACACGTCATTCCTAATCAACATCTTCCGTCTCACCAACGCATCTCTCCCAGGAGAAGGACTAGCGT TCCTAATTGCACCCGACTTGAAGCTGCCCGCAGCCAGCTCCGGGCAGTATTTGGGGCTGACCAATCGCGAATCTGATGGAAACAGTTCGAATCAAATCCT GGCCGTTGAGCTCGACACTTTCAAGCAGGACTTTGATCCCGATGCCAACCACTTAGGGTTGGACGTACACAGCGTGCGGTCCGTGAAGACCGCATCGCTG AGCGACCACGGGATCCAGCTGGCACCCGCCATTACTAGGTTCTACCTGGTCTGGATCCAGTACGATGGCCGGCGGAAGAGGATCGAGGTTTACATGGCGG AGAACGGCACTGCCAAGCCGGAAACCCCGATCCTCGAGGCGGACGATCTGGATCTGAAAGGAATCGTGAATCAACACTCGTACTTCGGATTCGCCGCATC CACCGGGAACAACACCCAGCTTAACTGCGTGTTGAGCTGGAATCTCACCGTGGAGCTCCTCGATCCAGAGGGAGCCGGAGCTCCCGCTGGCAGCGGCAGC TCCGGCTCCGGAGTCAAGATCGGACTCGGAATCGGAGTATCAATTTTCGTGCTGATTCTCGGCGGAGCAATGGCGGCAGGGTGGTGGTGGAGGAGGAAGA AGGCGGCAGAGGCGAATCCGAAGCTAACCGGAGCTCTGAAGAGCCTACCGGGGATGCCTAGGGAGTTTGATTTCAAGGATTTGAAGAAGGCGACGAATAA TTTCGACGAGAAGTTGAAGCTAGGTCAAGGAGGGTTCGGGATGGTGTACAAAGGAATGTTGCCAGAGGAACATGTTCCGGTGGCGGTGAAGAAGTTCTCG AGGGAGAATTTGAAAGGGCAGGACGATTTCTTGTCGGAGCTAACGATCATCAACCGTCTCCGGCATAAGCATCTCGTCCGGTTACTCGGATGGTGTCACA AGAACGGAACCCTTCTCTTGGTCTACGACTACATGCCAAATGGCAGCTTAGACAAGCACCTCTTCAACAACGGGTCCGAGGACTACATGAAAAACCCGAC CCCGTTACAATGGAAGCTCCGTTACAAGATCGTAACGGGAGTCGCCTCAGCGTTGCACTACCTCCACAACGAGTACGACCAGAAGGTTGTACATCGGGAC CTTAAAGCGAGCAACATTATGCTCGACGCGGACTTCAGTGCCCGCTTGGGCGATTTTGGTCTGGCTCGGGCTATTGACAACGAGAAGACCTCCTACGCGG AGTTGGAAGGGGTCCCCGGGACGATGGGGTACATTGCCCCGGAGTGCTTCCACACGGGGAAGGCCACGTGTGAGTCTGACGTCTATGGGTTCGGCGCAGT GGTGCTCGAGGTTGTCTGCGGGCAGAGACCCTGGACTAAGATTGGTGGGTTCACGGCCTTAGTAGATTGGGTCTGGTGGCTGCACCGGGAGGGGAGGATT TTAGAAGCCGTGGATAAGAGACTGGGAGATGAGTTTGTGGATGAGGAGGCGAAACGTCTCCTCCTCCTCGGGTTGGCTTGCTCTCATCCGATTGCAGGTC AAAGGCCCAACATGCAGCTGATTTATCAGATTGTATGCGGGTCGATGGAAGTGCCTAGAGTGCCTCCCTTTAAACCCGCATTCGTTTGGGCCCCGGCGGT GGATCCAGAAGGAGAAGATGGGAGTACGAGTAGTAGTATGAGAGTCGATTTGACTCCGGATACGACTCCAATCACCTCGGGTTGGTCCGCCGTGAGTGAA GATTATAACAGTGGAACAGGTTATACAAACAGCTATTCTCCTGTTTGA
AA sequence Show only first row Show all	>Lus10028699 pacid=23164578 polypeptide=Lus10028699 locus=Lus10028699.g ID=Lus10028699.BGIv1.0 annot-version=v1.0 MDLRHRRRRHILHFLLLVLAGASSISLTTSQQQQQIITENHRLGSPFTPADYSTLAVVDPATISNQALQVTPDSAGNFTLSNRSGRILFNQTYKLWDDDG GAGDGHRTASFNTSFLINIFRLTNASLPGEGLAFLIAPDLKLPAASSGQYLGLTNRESDGNSSNQILAVELDTFKQDFDPDANHLGLDVHSVRSVKTASL SDHGIQLAPAITRFYLVWIQYDGRRKRIEVYMAENGTAKPETPILEADDLDLKGIVNQHSYFGFAASTGNNTQLNCVLSWNLTVELLDPEGAGAPAGSGS SGSGVKIGLGIGVSIFVLILGGAMAAGWWWRRKKAAEANPKLTGALKSLPGMPREFDFKDLKKATNNFDEKLKLGQGGFGMVYKGMLPEEHVPVAVKKFS RENLKGQDDFLSELTIINRLRHKHLVRLLGWCHKNGTLLLVYDYMPNGSLDKHLFNNGSEDYMKNPTPLQWKLRYKIVTGVASALHYLHNEYDQKVVHRD LKASNIMLDADFSARLGDFGLARAIDNEKTSYAELEGVPGTMGYIAPECFHTGKATCESDVYGFGAVVLEVVCGQRPWTKIGGFTALVDWVWWLHREGRI LEAVDKRLGDEFVDEEAKRLLLLGLACSHPIAGQRPNMQLIYQIVCGSMEVPRVPPFKPAFVWAPAVDPEGEDGSTSSSMRVDLTPDTTPITSGWSAVSE DYNSGTGYTNSYSPV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06740			Concanavalin A-like lectin pro...		Lus10028699 [exp]	0	1
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10014844 [exp]	18.7	0.7028
AT4G13980	HSF	AT-HSFA5	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10016634 [exp]	22.8	0.6857
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10016565 [exp]	25.9	0.6655
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10013212 [exp]	39.7	0.6850
AT5G06740			Concanavalin A-like lectin pro...		Lus10009423 [exp]	49.8	0.6812
AT1G06870		Plsp2A	plastidic type I signal peptid...		Lus10011670 [exp]	91.2	0.6228
AT3G33530			Transducin family protein / WD...		Lus10043261 [exp]	95.1	0.5998
AT2G15900			Phox-associated domain;Phox-li...		Lus10027939 [exp]	103.6	0.6063
AT5G24430			Calcium-dependent protein kina...		Lus10023234 [exp]	105.0	0.5545
AT3G60320			Protein of unknown function (D...		Lus10028207 [exp]	119.2	0.5747

Compare expression of checked genes

Lus10028699 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.