Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08690 285 / 2e-100 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2) AT5G56150 282 / 2e-99 UBC30 ubiquitin-conjugating enzyme 30 (.1.2) AT1G64230 281 / 5e-99 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT5G53300 279 / 2e-98 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT4G27960 279 / 2e-98 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT5G41700 278 / 6e-98 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT2G16740 263 / 3e-92 UBC29 ubiquitin-conjugating enzyme 29 (.1) AT3G08700 249 / 2e-86 UBC12 ubiquitin-conjugating enzyme 12 (.1) AT3G13550 170 / 9e-55 EMB144, COP10, CIN4, FUS9 FUSCA 9, EMBRYO DEFECTIVE 144, CONSTITUTIVE PHOTOMORPHOGENIC 10, CYTOKININ-INSENSITIVE 4, Ubiquitin-conjugating enzyme family protein (.1.2) AT1G78870 149 / 4e-47 UBC35 ,UBC13A UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009422 [exp] 308 / 6e-110 AT3G08690 285 / 2e-100 ubiquitin-conjugating enzyme 11 (.1.2) Lus10039323 [exp] 284 / 4e-100 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10027570 [exp] 284 / 4e-100 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10014942 [exp] 283 / 1e-99 AT1G64230 301 / 3e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10038827 [exp] 283 / 1e-99 AT1G64230 301 / 3e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10032352 [exp] 281 / 4e-99 AT5G53300 302 / 2e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Lus10022726 [exp] 280 / 1e-98 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10014187 [exp] 280 / 1e-98 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10033937 [exp] 279 / 4e-98 AT5G53300 300 / 2e-106 ubiquitin-conjugating enzyme 10 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G471200 [exp] 286 / 5e-101 AT1G64230 292 / 2e-103 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.011G168200 [exp] 285 / 9e-101 AT1G64230 295 / 1e-104 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.001G094900 [exp] 285 / 1e-100 AT1G64230 302 / 2e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.012G033000 [exp] 284 / 3e-100 AT5G53300 302 / 1e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Potri.015G023300 [exp] 284 / 3e-100 AT5G53300 302 / 1e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Potri.003G136200 [exp] 283 / 9e-100 AT1G64230 304 / 4e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.006G110200 [exp] 282 / 1e-99 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.016G138900 [exp] 280 / 6e-99 AT1G64230 304 / 3e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.019G131400 [exp] 280 / 8e-99 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.019G083800 [exp] 276 / 3e-97 AT5G56150 280 / 1e-98 ubiquitin-conjugating enzyme 30 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10028700 pacid=23164641 polypeptide=Lus10028700 locus=Lus10028700.g ID=Lus10028700.BGIv1.0 annot-version=v1.0 ATGGCTTCAAAGAGGATTAACAAGGAGCTCAAGGACTTGCAGAAGGATCCTCCTGCATCATGCAGTGCAGGACCTGCTGGTGATGATATGTTCCATTGGC AAGCAACTATAATGGGTCCTCCAGATAGCCCTTATGCCGGTGGTGTTTTCTTGGTCACCATTAACTTCCCTCCAGATTATCCATTCAAGCCACCCAAGTG CTCGTTCAAGACCAAAGTTTATCACCCGAACATCAACAGCAACGGAAGCATCTGCCTCGACATCCTCAAAGAACAGTGGAGTCCAGCTCTCACCGTATCG AAGGTGCTGCTGTCTATTTGCTCGCTGCTGACGGACCCCAACCCGGACGATCCACTGGTGCCTGAGATTGCTCACATGTACAAGAACGACAGAACCAAGT ATGAGAACACCGCTCGTGCCTGGACCCAGAAGTACGCAATGGGTTAA
AA sequence Show only first row Show all	>Lus10028700 pacid=23164641 polypeptide=Lus10028700 locus=Lus10028700.g ID=Lus10028700.BGIv1.0 annot-version=v1.0 MASKRINKELKDLQKDPPASCSAGPAGDDMFHWQATIMGPPDSPYAGGVFLVTINFPPDYPFKPPKCSFKTKVYHPNINSNGSICLDILKEQWSPALTVS KVLLSICSLLTDPNPDDPLVPEIAHMYKNDRTKYENTARAWTQKYAMG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08690		ATUBC11, UBC11	ubiquitin-conjugating enzyme 1...		Lus10028700 [exp]	0	1
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10023018 [exp]	1.0	0.8996
AT2G31200		ADF6, ATADF6	actin depolymerizing factor 6 ...		Lus10022933 [exp]	2.4	0.8813
AT2G24940		ATMAPR2	membrane-associated progestero...		Lus10002241 [exp]	4.0	0.8509
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10032157 [exp]	4.9	0.8886
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025397 [exp]	6.5	0.8638
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10004109 [exp]	8.9	0.8726
AT1G08700		PS1	Presenilin-1 (.1)		Lus10020339 [exp]	9.5	0.8555
AT2G43250			unknown protein		Lus10040469 [exp]	10.2	0.8237
AT3G08690		ATUBC11, UBC11	ubiquitin-conjugating enzyme 1...		Lus10009422 [exp]	11.1	0.8746
AT1G04635		EMB1687	EMBRYO DEFECTIVE 1687, ribonuc...		Lus10032961 [exp]	14.0	0.7736

Compare expression of checked genes

Lus10028700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.