Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09620 227 / 8e-76 Mitochondrial transcription termination factor family protein (.1) AT2G44020 44 / 3e-05 Mitochondrial transcription termination factor family protein (.1) AT4G02990 42 / 0.0002 RUG2, BSM RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009420 [exp] 391 / 9e-141 AT4G09620 214 / 6e-71 Mitochondrial transcription termination factor family protein (.1) Lus10004614 [exp] 47 / 5e-06 AT2G44020 707 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10022321 [exp] 44 / 6e-05 AT4G02990 540 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Lus10014877 [exp] 44 / 7e-05 AT4G02990 665 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Lus10026571 [exp] 43 / 8e-05 AT4G38160 252 / 4e-83 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Lus10004534 [exp] 42 / 0.0001 AT2G44020 477 / 7e-168 Mitochondrial transcription termination factor family protein (.1) Lus10029422 [exp] 41 / 0.0003 AT2G36000 294 / 3e-98 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10013854 [exp] 40 / 0.0005 AT4G38160 446 / 2e-158 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Lus10004219 [exp] 40 / 0.0005 AT2G36000 293 / 8e-98 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G113500 [exp] 259 / 2e-88 AT4G09620 244 / 1e-82 Mitochondrial transcription termination factor family protein (.1) Potri.013G116700 [exp] 48 / 2e-06 AT2G44020 764 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.014G137400 [exp] 47 / 4e-06 AT4G02990 669 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Potri.001G029400 [exp] 42 / 0.0001 AT5G07900 181 / 4e-53 Mitochondrial transcription termination factor family protein (.1) Potri.004G209400 [exp] 41 / 0.0002 AT4G38160 481 / 3e-172 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Potri.001G035200 [exp] 40 / 0.0008 AT5G07900 168 / 3e-48 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10028701 pacid=23164520 polypeptide=Lus10028701 locus=Lus10028701.g ID=Lus10028701.BGIv1.0 annot-version=v1.0 ATGGTGGCAGGGATGGTAGGAAGAGCATTGGCTGCAGCACCTCTGCTAACCTTCAATTCCGGAACTCGATCGGGCTTTCTTGATCACGACCTTCAAACAA CAACACCTCTAGTTCTAAGACCGAACCCGAGTCATCCCAGCAGATGGGCGGTAGATTCGACTGCAAAGTCCGAAACCTTACCCTTAAGCGACCAAGATCA GACAACATGGGACTCGTGCAGAGAAGTCCTGTCAGCATTCGACTTCGACATGAACGAAAAGGACAAGATGCTAGGGAAAGCATTCGGCCACGTGGCATCC CCATACTGGGGGGAAGACCGGAAGCAAGAAGTCCCTACGTACGAGGTCGTTAAAGGGATCGTGGACTTCCTGAAAGGCCTTGGCTTGACCGACGAGGATC TGGTCAAGGTGCTGAAGAAGTTTCCAGAAGTCATGGGGTGTAGCCTCGAAGAGGATCTGAAGAAGAACGTGGGAATTCTCGAAAAGGAGTGGGGGATCAA GGGGAAGACTCTGAGGAGCTTGCTGCTTCGGAATCCGAAGGTTTTGGGGTTCAATGTCGATTGCAAGGGCGATTGCATGGCGCAATGCACCCGCTGCTGG GTTCGTTTCTGA
AA sequence Show only first row Show all	>Lus10028701 pacid=23164520 polypeptide=Lus10028701 locus=Lus10028701.g ID=Lus10028701.BGIv1.0 annot-version=v1.0 MVAGMVGRALAAAPLLTFNSGTRSGFLDHDLQTTTPLVLRPNPSHPSRWAVDSTAKSETLPLSDQDQTTWDSCREVLSAFDFDMNEKDKMLGKAFGHVAS PYWGEDRKQEVPTYEVVKGIVDFLKGLGLTDEDLVKVLKKFPEVMGCSLEEDLKKNVGILEKEWGIKGKTLRSLLLRNPKVLGFNVDCKGDCMAQCTRCW VRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09620			Mitochondrial transcription te...		Lus10028701 [exp]	0	1
AT5G49940		ATCNFU2, NFU2	CHLOROPLAST-LOCALIZED NIFU-LIK...		Lus10015481 [exp]	2.0	0.8698
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10019480 [exp]	3.7	0.8636
AT1G70480			Domain of unknown function (DU...		Lus10029147 [exp]	9.4	0.8182
AT4G21860		MSRB2	methionine sulfoxide reductase...		Lus10007105 [exp]	10.0	0.7823
AT5G54855			Pollen Ole e 1 allergen and ex...		Lus10001821 [exp]	10.1	0.8248
AT4G32530			ATPase, F0/V0 complex, subunit...		Lus10000694 [exp]	10.2	0.8299
AT1G77290			Glutathione S-transferase fami...		Lus10029723 [exp]	17.0	0.8285
AT4G21860		MSRB2	methionine sulfoxide reductase...		Lus10020486 [exp]	19.4	0.8240
AT4G38225			unknown protein		Lus10026560 [exp]	19.9	0.8412
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Lus10023428 [exp]	20.2	0.8169

Compare expression of checked genes

Lus10028701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.