Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34550 706 / 0 EMB2756 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) AT4G09630 602 / 0 Protein of unknown function (DUF616) (.1) AT2G02910 473 / 1e-161 Protein of unknown function (DUF616) (.1) AT1G53040 268 / 2e-81 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) AT1G28240 264 / 1e-79 Protein of unknown function (DUF616) (.1) AT5G42660 233 / 4e-69 Protein of unknown function (DUF616) (.1) AT4G38500 228 / 9e-67 Protein of unknown function (DUF616) (.1) AT5G46220 140 / 9e-36 Protein of unknown function (DUF616) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009419 [exp] 1207 / 0 AT1G34550 753 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Lus10036741 [exp] 461 / 1e-156 AT2G02910 545 / 0.0 Protein of unknown function (DUF616) (.1) Lus10037186 [exp] 460 / 1e-154 AT2G02910 546 / 0.0 Protein of unknown function (DUF616) (.1) Lus10001446 [exp] 263 / 4e-79 AT1G28240 706 / 0.0 Protein of unknown function (DUF616) (.1) Lus10011175 [exp] 256 / 1e-76 AT1G28240 730 / 0.0 Protein of unknown function (DUF616) (.1) Lus10025082 [exp] 242 / 3e-72 AT4G38500 764 / 0.0 Protein of unknown function (DUF616) (.1) Lus10015438 [exp] 242 / 2e-71 AT1G28240 698 / 0.0 Protein of unknown function (DUF616) (.1) Lus10024001 [exp] 240 / 2e-71 AT4G38500 771 / 0.0 Protein of unknown function (DUF616) (.1) Lus10016294 [exp] 223 / 3e-65 AT5G42660 603 / 0.0 Protein of unknown function (DUF616) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G113700 [exp] 768 / 0 AT1G34550 708 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Potri.019G084100 [exp] 766 / 0 AT1G34550 707 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Potri.010G094000 [exp] 516 / 1e-178 AT2G02910 565 / 0.0 Protein of unknown function (DUF616) (.1) Potri.011G053000 [exp] 261 / 1e-78 AT1G28240 775 / 0.0 Protein of unknown function (DUF616) (.1) Potri.011G119300 [exp] 260 / 2e-78 AT1G53040 588 / 0.0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) Potri.004G044100 [exp] 259 / 9e-78 AT1G28240 779 / 0.0 Protein of unknown function (DUF616) (.1) Potri.001G399800 [exp] 255 / 1e-76 AT1G53040 574 / 0.0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) Potri.009G138000 [exp] 237 / 3e-70 AT4G38500 725 / 0.0 Protein of unknown function (DUF616) (.1) Potri.004G177600 [exp] 235 / 1e-69 AT4G38500 750 / 0.0 Protein of unknown function (DUF616) (.1) Potri.002G149900 [exp] 230 / 7e-68 AT5G42660 633 / 0.0 Protein of unknown function (DUF616) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04765 [flax] [poplar] DUF616 Protein of unknown function (DUF616)
Representative CDS sequence Show only first row Show all	>Lus10028702 pacid=23164474 polypeptide=Lus10028702 locus=Lus10028702.g ID=Lus10028702.BGIv1.0 annot-version=v1.0 ATGGCTCAGTACAGGCAATCGGGTCAGCAGCACTTCCCCAACGGCTCAGATCACGTATCGGTCGGCGTCCGGGCGTCTTCTTCACAGCAGCACCTCCAGC ACAAGTCGGGGCGGGCCCGCCGATCTGGGCGATCCGATAAGGGACGGTTTGGGAGCTTCTCCATTGGCGCTGTGGTGATATTCCTTTGTGCTGTGCTTTT CGTCACTGTGTTAGCTTACAATTACTTGTCTGCTGAGGAAAAAGGTATTGATGATCCTAGAGTTGAGGACGATGACTCCAAGAGTGATCTTGATTTCCTT ACGAATGTCACTCGGACTGACTCTGTGAAAGTCCTTGAATTTGGTCAAGGCTCTGTAGATCATGCCAAGGATTCTAGATATTGGGATAGGGATGATAGGA GGAGGGATGATGATTATGACGAGGATGACGTGGATCATAATAGCGAGGATTCTAATGGCGGATCTGGTCATGAACAGCATGAGAAGGGAAATGTGAAGGA CAAGCAGAAAACTTTGCACAGTGGTGTTGTGTCTAAGGGATTAGATCAAAAGGGAGTCGGGATGTACAATGAGAACGGGCGTAAAGAGCTGAAGAAGTAT GAAGCGGAGTATGTGGCTTCGTTAAAGAATCAAGGGCAATCGATGGAAGATGAGGAGCTGGAAGAGCCTGCTGATGGCGAGAATGAGTATGATGATGCTA TAGATTCTCATGATGCTCGGCACTTTGGTGAAGATACCAAAGATTCTTCTGGTAAAAGTAAGGATCAGCCTACCGGAAAAGATATTAGGGGAGCTTCTCT GAGTTCATCTCATAAGGGGCTGAGTTCGAACTCAAACACTTATCCAAGTGCTGAACATGCAAATGGGAATGGACATGGTTCAAGTAAATCAAAGTCCGAG CCAAAGAAAAAACCTAGGCGGCGCAAGTTTTCGGGCTCCTGTGAGATGAAGTTTCTGAACTCCACAAAACTCGTGGAGCCTATCGACAATAGAAAGTTTT CAAGATTCGCCCTGCAGTATACCGACAGAGAAGAAAGACCTGCAGAAGATGAAACGTGGGAACCTAGATTCGCAGGGCATCAGAGCCTAGAAGAGCGAGA GGATTCATTCTCAGCACGTGATCAGAAAATAAAATGTGGCTTTGTCAAAGGCCCTGAAGGCTATCCTAGTACAGGATTTGATTTATCAGAAGATGATACT AACTATATCAGTAGATGCCACATTGCCGTCATCTCTTGCATCTTTGGAAATTCAGATCGCCTAAGGTCACCTTTCAGCAAAGCGGTCACTCGTTTATCGA GGAAAAATGTTTGCTTTGTTATGTTCATGGATGAAACTACATTACAAACCCTAACTTCAGAAGGCCATATGCCAGATAGGGAAGGATTTATCGGTTTGTG GAAGATCGTGGTGGTGAAGAATCTACCTTATGACGATATGCGGAGAGTTGGTAAAATACCGAAATTGTTGCCTCACAGACTGTTCCCTTCTGCAAGATAT TCAATGTGGTTGGATAGCAAATTACGGCTTCAACTCGATCCACAAATGGTCCTGGAATATCTCCTGTGGCGAAAAGGTCACGAGTATGCCATTTCCAATC ACTATGATCGTCATTGCGTATGGGAAGAGGTCGCACAGAATAAACGCCTCAACAAATACAATCACACAATAATAGACGAGCAATTTGCCTTCTACCAAGC TGATGGTCTAACAAAATTCGATCCCTCTGATCCAAACAAGCTTCTTCCCAGCAATGTACCGGAAGGATCATTGATTGTCCGAGCACACACTCCGATGTCG AACCTATTCTCGTGTCTATGGTTCAACGAGGTGGAACGCTTCACTCCCCGAGACCAGCTGAGTTTTGCCTATACATACCACAAGTTGAGAAGGATGAACC CCAGCAAACCATTTAACTTCCATATGTTCAAGGATTGTGAAAGGAGAGCCATAGCCAAGCTGTTCCGTCACCGTACCGAGGAGAAGCGACTTGTGCACGA AGCAACGAGATGA
AA sequence Show only first row Show all	>Lus10028702 pacid=23164474 polypeptide=Lus10028702 locus=Lus10028702.g ID=Lus10028702.BGIv1.0 annot-version=v1.0 MAQYRQSGQQHFPNGSDHVSVGVRASSSQQHLQHKSGRARRSGRSDKGRFGSFSIGAVVIFLCAVLFVTVLAYNYLSAEEKGIDDPRVEDDDSKSDLDFL TNVTRTDSVKVLEFGQGSVDHAKDSRYWDRDDRRRDDDYDEDDVDHNSEDSNGGSGHEQHEKGNVKDKQKTLHSGVVSKGLDQKGVGMYNENGRKELKKY EAEYVASLKNQGQSMEDEELEEPADGENEYDDAIDSHDARHFGEDTKDSSGKSKDQPTGKDIRGASLSSSHKGLSSNSNTYPSAEHANGNGHGSSKSKSE PKKKPRRRKFSGSCEMKFLNSTKLVEPIDNRKFSRFALQYTDREERPAEDETWEPRFAGHQSLEEREDSFSARDQKIKCGFVKGPEGYPSTGFDLSEDDT NYISRCHIAVISCIFGNSDRLRSPFSKAVTRLSRKNVCFVMFMDETTLQTLTSEGHMPDREGFIGLWKIVVVKNLPYDDMRRVGKIPKLLPHRLFPSARY SMWLDSKLRLQLDPQMVLEYLLWRKGHEYAISNHYDRHCVWEEVAQNKRLNKYNHTIIDEQFAFYQADGLTKFDPSDPNKLLPSNVPEGSLIVRAHTPMS NLFSCLWFNEVERFTPRDQLSFAYTYHKLRRMNPSKPFNFHMFKDCERRAIAKLFRHRTEEKRLVHEATR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Lus10028702 [exp]	0	1
AT5G12250		TUB6	beta-6 tubulin (.1)		Lus10036069 [exp]	1.4	0.9200
AT5G10840			Endomembrane protein 70 protei...		Lus10042415 [exp]	2.0	0.9434
AT1G08280			Glycosyltransferase family 29 ...		Lus10043382 [exp]	3.0	0.9183
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10006546 [exp]	6.0	0.9162
AT1G30630			Coatomer epsilon subunit (.1)		Lus10038422 [exp]	7.5	0.9014
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10030479 [exp]	8.1	0.8970
AT5G26667		PYR6	P-loop containing nucleoside t...		Lus10019509 [exp]	8.1	0.8922
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Lus10014435 [exp]	8.7	0.9160
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10039053 [exp]	8.9	0.8972
AT2G01970			Endomembrane protein 70 protei...		Lus10026371 [exp]	9.8	0.9066

Compare expression of checked genes

Lus10028702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.