Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71960 774 / 0 ATABCG25, ABCG25 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) AT1G31770 554 / 0 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT4G27420 508 / 4e-173 ABCG9 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) AT3G25620 503 / 2e-170 ABCG21 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) AT5G06530 498 / 2e-167 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT3G52310 488 / 2e-163 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1) AT3G13220 387 / 2e-125 MSR02, AtABCG26, ABCG26, WBC27 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) AT2G01320 255 / 8e-75 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT2G37360 245 / 5e-71 ABCG2 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) AT3G55130 242 / 4e-70 ABCG19, ATWBC19 ATP-binding cassette G19, white-brown complex homolog 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006046 [exp] 583 / 0 AT1G71960 387 / 8e-131 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Lus10035692 [exp] 545 / 0 AT1G31770 1001 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10037283 [exp] 537 / 0 AT1G31770 984 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10034775 [exp] 537 / 0 AT1G31770 1028 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10033314 [exp] 509 / 3e-174 AT1G31770 941 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10025596 [exp] 509 / 2e-173 AT4G27420 687 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Lus10034387 [exp] 502 / 7e-170 AT3G25620 791 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Lus10025597 [exp] 499 / 4e-169 AT4G27420 707 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Lus10029635 [exp] 488 / 4e-165 AT4G27420 698 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G111900 [exp] 832 / 0 AT1G71960 795 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.019G083000 [exp] 816 / 0 AT1G71960 782 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.004G236500 [exp] 541 / 0 AT1G31770 970 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.010G131900 [exp] 525 / 6e-179 AT3G25620 852 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Potri.001G404000 [exp] 515 / 6e-176 AT4G27420 690 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.003G046800 [exp] 516 / 1e-175 AT1G31770 945 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.011G123200 [exp] 496 / 1e-168 AT4G27420 737 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.016G065900 [exp] 499 / 7e-168 AT5G06530 1139 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.006G199500 [exp] 450 / 8e-149 AT5G06530 1013 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.001G370600 [exp] 412 / 8e-135 AT3G13220 1012 / 0.0 ATP-binding cassette G26, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10028704 pacid=23164637 polypeptide=Lus10028704 locus=Lus10028704.g ID=Lus10028704.BGIv1.0 annot-version=v1.0 ATGGAACCACCCCATCCTCCCAAACACTCCCCTACTACTACTCCTCCTCCTCCTCCTCCTCCGCCGCCTGCCCCCGCCGCCGCCGCCTTCATCCTGTCCT CCGTCTCCCTCCCCATCACCCTCAAGTTTGTCGATTTGTGTTACAGAGTAAAGCTTCCTAGCAAGGCTAACGGAACAACCTGCGGGATCGGACGGTTGAT ATCACCCAACCAGAAACCGACGACGGATACGGATCATGCGCAGGAGCGGACGATACTAAACGGAATCACCGGAATGGTCTCTCCGGGGGAGATCCTGGCC GTCCTGGGACCATCCGGGAGCGGGAAGTCTACGCTCCTGAACGCCCTGTCAGGACGGTTGAATCGAATCGGTCATAGTAGTTTGACCGGTTCGATCATGG CCAACGACGACAAAAAGATGTCCGCCAGGCAGATCGTGAGGCGGACTGGATTTGTTGCGCAGGACGACGTGTTGTATCCGCACCTGACGGTGCGGGAGAC GCTCGTTTACTGCTCGCTTCTCCGCCTGTCCACCCTCTCGTCTCGCGACGAGAAGGTGGCAGCAGCGGAGTGGGCGATAACCGAGCTTGGTCTCGGGAAA TGCGCCGACACGATGATCGGGAATAGCTTCGTTCGGGGAGTATCGGGCGGGGAGAGGAAGAGGGTGAGCATAGCTCACGAGTTGTTGATCAACCCGAGTT TGTTGATACTCGACGAGCCGACGTCCGGTTTGGATTCCACGGCGGCGTATAGGCTTGTGGCGACTTTGGGACAGCTGGCGAAAAGTGGGAAGAGGACTGT GGTTACTTCGGTTCACCAGCCGTCGAGCCGGGTTTACCAGATGTTCGACTCGGTTCTGGTTTTGAGTGAAGGGAGGAGCTTGTATTTTGGGAAAGGTTGC GAGGCAATGGGTTATTTCGAGTCGGTTGGTTACTCGCCGGCTTTTCCAATGAACCCGGCCGATTTCCTCCTCGATCTCGCCAACGGGTTTAGCAATCTTG ATGGCACAAATGAAAGAGACAAGCCTAATGTGAAGCAGAACCTAATGGCATCTTACAATGCAATTCTGGCTCCAAAGGTGAAATCAGCTTGCTTGGAAGC CACGGCAAAGGAGCTGTCAAGTGTTACCAATGGTGGCATGAACAACAACAATTCGTCATTGAAATTGCACCGAAGCTACAGAGGAGAGCACAGAGTTAGC CTCGCGACGTGGTTCCACCAATTCACTATCCTCCTGTGTCGTAGCTTGAAGGAGAGAAGACACGAATCATTCAACACGCTCCGCGTGTTTCAGGTTCTGG CGGGCGCCCTGTTGGCCGGTTTGATGTGGTGGCACTCTGATTTTCGAGACATTCAGGACCGGCTCGGTTTGTTGTTCTTCATATCAATCTTTTGGGGTGT TTTGCCTTCGTTCAATGCGGTCTTCGCCTTCCCTCAGGAGCGTGCCATCTTCATGAAGGAAAGGGCGTCCGGAATGTACACACTTTCGTCCTACTTCATG GCTCGGATCGTGGGGGATATGCCGATGGAGCTAGCCCTTCCGGCCATCTTCATCGCCATGGCCTACTGGATGACCGGAATGAAGCCCGATTTGAGTGCGT TTCTCTTGACTCTTCTCATCCTACTAGGCTACGTGCTCGTGTCTCAGGGCCTAGGTCTAGCCCTTGGAGCGGCCATCATGGATGCCAAGCAAGCATCCAC GTTGGCCACTGTTACGATGCTCGCATTCGTGTTGACGGGAGGGTTCTACGTGCACAAGGTCCCGACGTGTATGGCATGGATGAAGTACGTCTCCACGACT TTCTACACTTATAGGTTGCTCATCAACGTCCAGTACGGGGACGGGGAGAGAATCGCAAAGGCGTTGGGCTGTTCGGGGCGAAACGGGGGAGATGGAGGAC CGAACTGCAAGTTTGTCAGGGAAGATGTGCAAGGACAAATCAGCCCTTGGTTTAGTGTTGGGGTGATGGTGTTCATGTTTGTTGGGTATAGAGTGCTGGC TTACTTGGCTTTGAGGAGGATTAGAACTTGA
AA sequence Show only first row Show all	>Lus10028704 pacid=23164637 polypeptide=Lus10028704 locus=Lus10028704.g ID=Lus10028704.BGIv1.0 annot-version=v1.0 MEPPHPPKHSPTTTPPPPPPPPPAPAAAAFILSSVSLPITLKFVDLCYRVKLPSKANGTTCGIGRLISPNQKPTTDTDHAQERTILNGITGMVSPGEILA VLGPSGSGKSTLLNALSGRLNRIGHSSLTGSIMANDDKKMSARQIVRRTGFVAQDDVLYPHLTVRETLVYCSLLRLSTLSSRDEKVAAAEWAITELGLGK CADTMIGNSFVRGVSGGERKRVSIAHELLINPSLLILDEPTSGLDSTAAYRLVATLGQLAKSGKRTVVTSVHQPSSRVYQMFDSVLVLSEGRSLYFGKGC EAMGYFESVGYSPAFPMNPADFLLDLANGFSNLDGTNERDKPNVKQNLMASYNAILAPKVKSACLEATAKELSSVTNGGMNNNNSSLKLHRSYRGEHRVS LATWFHQFTILLCRSLKERRHESFNTLRVFQVLAGALLAGLMWWHSDFRDIQDRLGLLFFISIFWGVLPSFNAVFAFPQERAIFMKERASGMYTLSSYFM ARIVGDMPMELALPAIFIAMAYWMTGMKPDLSAFLLTLLILLGYVLVSQGLGLALGAAIMDAKQASTLATVTMLAFVLTGGFYVHKVPTCMAWMKYVSTT FYTYRLLINVQYGDGERIAKALGCSGRNGGDGGPNCKFVREDVQGQISPWFSVGVMVFMFVGYRVLAYLALRRIRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71960		ATABCG25, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10028704 [exp]	0	1
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Lus10002381 [exp]	3.3	0.8633
AT1G71960		ATABCG25, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10006046 [exp]	7.3	0.7353
AT1G68430			unknown protein		Lus10003042 [exp]	10.4	0.8267
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Lus10030857 [exp]	11.3	0.7566
AT2G16230			O-Glycosyl hydrolases family 1...		Lus10012080 [exp]	11.3	0.8500
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10035783 [exp]	12.5	0.8260
AT3G25290			Auxin-responsive family protei...		Lus10021553 [exp]	17.7	0.8254
AT3G30841			Cofactor-independent phosphogl...		Lus10034089 [exp]	21.6	0.7950
AT1G69160			unknown protein		Lus10036813 [exp]	26.2	0.7804
AT5G48060			C2 calcium/lipid-binding plant...		Lus10037479 [exp]	27.3	0.8252

Compare expression of checked genes

Lus10028704 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.