Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35660 799 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006047 [exp] 2136 / 0 AT1G35660 1470 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G083100 [exp] 1437 / 0 AT1G35660 1402 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028705 pacid=23164496 polypeptide=Lus10028705 locus=Lus10028705.g ID=Lus10028705.BGIv1.0 annot-version=v1.0 ATGGAGAAACCGTCGCCACCTTCGTCGCCGTCGTCGAGCTCATTGGACGGTTCCAAAGAGCTGCAGTGCGTTGGTAGGTTGGAGATCGTAAGGCCGAAGC CAGTAGGTTTCCTCTGCGGTTCCATTCCTGTGCCGACTGATAAGTCATTTCATGCCATTGATTCGGCTCTTGTTCCTTCGAGCCAGAAGGTGAGTGCGCC GAGGTATAGAATGCTTCCGACGGAGACTGATCTCAACACTCTTCCAGTTGTTTCTAACTTGCCTGAGAAGGTTCTTCAGATCGGTGCTGTACAGTCTAAA ACCACCGGTGAACTGCTATGGGAAGGGGATGCCGTCTCATCAAACATTAGAAGGAAATGTGAAGCCCTTGCTGTAACTGGTCTAGTTGAATATGGAGATG AGATAGATGTGATAGCTCCAGCTGATATCCTGAAGCAAATCTTTAAGATGCCCTATTCCAAAGCTCGGTTGTCTATTGCAGTGCGTCGTATTGGACAAAC GCTTGTATTGAATTCTGGGCCTGATGTTGAAGAGGGAGAGAAGCTAGTCAGAAAATATGGAACTCAATCAAAATGTGCTGATCAATATCTATTTCTGAAC TTTGCTATGCATTCGGTGAGAATGGAGGCCTGTGATTGTCCGCCATCTCATCATATGCCCGAAGGCCAATCAAACTCTTCTTTGCCCGAGGGAAGTACTT TACAGTCTGATAGGAAGGGTGATGATGCTGTATCGAATAAAGAAGTGAACCATAGTTCACACTACTCAGAGGTCAAACAAGGTGGTTTCTTATTAGAAAG AAAGAAGAACAAGAGAAACAAAGGTCGCCATCCTATTAAGAAAACATCACATGTCAGTGAGAAGTCCAAAAGCACAGTGCAAGAATCCGAGAAACATAAA AGAGTGAGACATGATGGGTTTCTAAGGGCTTTGTTCTGGCAGTTCCATAACTTCCGCATGCTTCTGGGCAGTGACTTACTTCTGTTCAGTAATGAAAAGT ACCTTGCCGTGAGCTTGCATTTATGGGACACGACAGGAATCTCCGAAGATGGTACACCAGCTTTTCATCCTCATGTTGTTCAGCAGAATGGTCTTTCTGT GCTGAGATTCCTTCAAAAAAATTGCAAGCAAGATCCCGGTGCTTATTGGCTTTACAAAAGCGCCGGCGAAGACATGATTCAACTTTTTGATCTTTCTATC ATTCCTGACAATCACTCTTCCAGTGACTATAATGATGATTCAAGCTCCCTGCCATCACTGCATAGAGGGTGTGATTCCTCGTTCTCATTAGGAACTCTCC TTTATCGAGTTGCACACAGGCTCTCCCTTTCAATGGCTCCTAATAGAAGAGCAAAGTGTGCTAGGTTCTTCAGAAAATGCTTCGAATTCCTCGAAGAGCC AGATCATCTGGTTGTACGTGCATCAGCTCATGAAGAGTTTGCACGGCTTCTTTTGACTAATGTTGAAGAGCTGGAATTGAGCTCAGAATCTCTTGCTATT GACTATGAAGCTACAGTCCCAGTATTGCCTCAGGATCCATTTGATTCCCCCCCCCCCGAATATGTTGTGGAGGAAGGCGACATTGAAACAGCTGGAAAAA GTATAGGGACTCTAGGCAAAACTGAAATATTCGAAGCTACAGAGAGGACATTGGAGGTGGATGAACCTGTTCCCCGCAGTTTGATGCCTTTGGGTTACAA AGAATTGAGAGGCCCAGTAGAAAACCTACCAACTGTCGATTCTGATGAAAGCCTCGTAGTCTGTGAGATACCTAAGCCATCTACCCAGGCGATTCAAACT GTTGGTGATCCCATATCCACTAAGCTAGCTGCTGTTCATCATGTTTCACAAGCCATTAAGTCGTTCAGATGGGTGCGCCAGCTACAACCTTCTGATGCAG AATTTATTGATGAAGACAGCATTGCTTATAATCAGCCTCCTGTAGAGTTCTCCGTCTGCGCTTGTGGGGATCCTGACTGCATTGAAGTTTGTGACATCCG TGAATGGCTTCCAACGTCAAAAATAGATCATAAACTGTGGAAACTCGTTCTTCTACTTGGAGAATCCTATCTGGCCCTTGGGCAAGCATATAAAGAAGAT AAACAGTTGCATCAGGCTCTCAAGATCGTAGAGTTAGCATCTTCTGTTTATGGATCAATGCCACAGCATCTGGACGATGCTCGGTTTATGTCCTCAATGG TTAAGTATTCGTCCTCAAGGCAGTCTACTGACGAAGATGGCAAGCTAATATCTTATATTGGTAATGTAAAGGGAGTGAAATCTGGTACTAATGGTGACAA GCTTGCCTTTGAGCACATGTCTTCGACATATCTATTCTGGGCAAAGGCATGGACATTGGTTGGAGATGTCTATGTCGACTTTCATTTCATGAAAGGTTCA GAACTCTTGTTGCAAACGGAGAAGAAAAAATCTCTTGCAGAATTGCGAATGCCAGGTGAGGTAGTGAAGGAGGTCCAAAGGCTGAAGAAAAGGCTGGGTG AGTCTGTTCAGAATTGCAGTTCTTGTTCTTTGGTGAATTGTAGCTGCCGGAGCGATAGGGCCAGTAGTGGTAGCAGTGCAAGTAGCAGCAGTGGAAATTC TAAGCCTTCTGTATCTTATGGCAGAAAGCACGGGAAAAGATCCGGTTCTAAGAAAGTTAAATCGCCAATACTTCTAGACAGCAAGGATGATCCTGCTAAT GGAGATATGGTAACTAAGAATAAGCCAGATGGAAGGCTTTCTCAACCCGGCCAATATGGTGAAATCCCGGCAGGAGATTCGGGTATTTCCATGGAGCAGC CTAGGAAGAATCCTGATACAGTTGGCTTGGAGCGCCGTAAATCTGCTACAGATTCAAAAAACAACCCTAGAAGCCAGGATGGTGGGATATTTAAGTACCT TCGGGGAACCATTGTTGGAGGCACGGAGGATAACCTTTCTACTGCCCGAACTTGCTACCAAGAAGCTAGAAAAGCACTAACTGGTCTTTCATCCGCTTCG CTGGAACTGCAGTCTTTGTTAAAGAAGATAGGGTGGGTCTGCAACGAAATCGGCCGAAAGAGTCTGGAAAGGAATCAATTGACAGAGGCAGAATGTGCTT TTGCCGATGCCATCAGTGCATTCAAGGAAGTGTCTGACCACGCAAACATCATATTGATTAATTGTAACCTTGGCCATGGCAGACGGGCATTGGCCGAGGA AATGGTGACCAAAGCAGAAAGTCTCAGACATCATGCGATCTTCCAGAAAGCACACAAGCAAGCTCTAGAAACTGCAAAGCTCGAATACCGTGAATCACTT GGGTACTATGGGGCAGCGAAGGCCGAACTGAATGCGATATCAGATTATGCAAACAATGTGTCGGTTGGTCTTAGAAATGAAGTGTGCACTCAGCTGGCTC ATACATATCTGAGACTCGGCATGCTTTTGGCAAGAGAAGATATCACCGCTGAAGTAAACGAAAATGAGTTGTCCCGTGCCAGTAGAACTCGAAAAGATGG GAGGATGCACGAGATTTCTGCCAATGATGCTATCAGGGAGGCGTTGTCTCTGTACGAGTCCCTAGGTGAAATTCGCAAACAAGAGGCTGCATATGCCTAC TTTCAGCTTGCTTGCCATCAAAGGGATTGCTGCTTGAAATTTCTTGGGACGGACCGGAATACCAAATGTGAAAACAGCAGTCTACAGCGGGTGAAGCAAT ATGCTTCTCTGGCCGAGAGGAACTGGCAAAAATCGGTCGATTTTTACATTTCAGAGACACACCCTTCCATGTATCTCACCATCGTCATAGAGTGA
AA sequence Show only first row Show all	>Lus10028705 pacid=23164496 polypeptide=Lus10028705 locus=Lus10028705.g ID=Lus10028705.BGIv1.0 annot-version=v1.0 MEKPSPPSSPSSSSLDGSKELQCVGRLEIVRPKPVGFLCGSIPVPTDKSFHAIDSALVPSSQKVSAPRYRMLPTETDLNTLPVVSNLPEKVLQIGAVQSK TTGELLWEGDAVSSNIRRKCEALAVTGLVEYGDEIDVIAPADILKQIFKMPYSKARLSIAVRRIGQTLVLNSGPDVEEGEKLVRKYGTQSKCADQYLFLN FAMHSVRMEACDCPPSHHMPEGQSNSSLPEGSTLQSDRKGDDAVSNKEVNHSSHYSEVKQGGFLLERKKNKRNKGRHPIKKTSHVSEKSKSTVQESEKHK RVRHDGFLRALFWQFHNFRMLLGSDLLLFSNEKYLAVSLHLWDTTGISEDGTPAFHPHVVQQNGLSVLRFLQKNCKQDPGAYWLYKSAGEDMIQLFDLSI IPDNHSSSDYNDDSSSLPSLHRGCDSSFSLGTLLYRVAHRLSLSMAPNRRAKCARFFRKCFEFLEEPDHLVVRASAHEEFARLLLTNVEELELSSESLAI DYEATVPVLPQDPFDSPPPEYVVEEGDIETAGKSIGTLGKTEIFEATERTLEVDEPVPRSLMPLGYKELRGPVENLPTVDSDESLVVCEIPKPSTQAIQT VGDPISTKLAAVHHVSQAIKSFRWVRQLQPSDAEFIDEDSIAYNQPPVEFSVCACGDPDCIEVCDIREWLPTSKIDHKLWKLVLLLGESYLALGQAYKED KQLHQALKIVELASSVYGSMPQHLDDARFMSSMVKYSSSRQSTDEDGKLISYIGNVKGVKSGTNGDKLAFEHMSSTYLFWAKAWTLVGDVYVDFHFMKGS ELLLQTEKKKSLAELRMPGEVVKEVQRLKKRLGESVQNCSSCSLVNCSCRSDRASSGSSASSSSGNSKPSVSYGRKHGKRSGSKKVKSPILLDSKDDPAN GDMVTKNKPDGRLSQPGQYGEIPAGDSGISMEQPRKNPDTVGLERRKSATDSKNNPRSQDGGIFKYLRGTIVGGTEDNLSTARTCYQEARKALTGLSSAS LELQSLLKKIGWVCNEIGRKSLERNQLTEAECAFADAISAFKEVSDHANIILINCNLGHGRRALAEEMVTKAESLRHHAIFQKAHKQALETAKLEYRESL GYYGAAKAELNAISDYANNVSVGLRNEVCTQLAHTYLRLGMLLAREDITAEVNENELSRASRTRKDGRMHEISANDAIREALSLYESLGEIRKQEAAYAY FQLACHQRDCCLKFLGTDRNTKCENSSLQRVKQYASLAERNWQKSVDFYISETHPSMYLTIVIE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G35660			unknown protein		Lus10028705 [exp]	0	1
AT1G35660			unknown protein		Lus10006047 [exp]	1.0	0.8860
AT5G19680			Leucine-rich repeat (LRR) fami...		Lus10010891 [exp]	2.4	0.8483
AT1G31840			Tetratricopeptide repeat (TPR)...		Lus10009465 [exp]	4.7	0.8578
AT3G48810			Pentatricopeptide repeat (PPR)...		Lus10009023 [exp]	9.5	0.7995
AT1G03100			Pentatricopeptide repeat (PPR)...		Lus10007353 [exp]	11.0	0.8362
AT3G56640		SEC15A	exocyst complex component sec1...		Lus10038993 [exp]	19.4	0.7905
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10015696 [exp]	20.8	0.8145
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Lus10011188 [exp]	22.4	0.8122
AT1G51965		ABO5	ABA Overly-Sensitive 5 (.1)		Lus10037592 [exp]	22.4	0.7645
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Lus10008681 [exp]	22.6	0.8181

Compare expression of checked genes

Lus10028705 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.