Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02510 476 / 3e-148 TOC86, TOC160, PPI2, ATTOC159, TOC159 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) AT3G16620 315 / 6e-92 ATTOC120 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) AT2G16640 310 / 8e-90 ATTOC132, TOC132 multimeric translocon complex in the outer envelope membrane 132 (.1) AT5G20300 232 / 2e-64 Toc90 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) AT5G05000 129 / 2e-32 ATTOC34, OEP34, TOC34 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34, translocon at the outer envelope membrane of chloroplasts 34 (.1.2.3) AT1G02280 110 / 2e-26 PPI1, ATTOC33, TOC33 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2) AT4G15810 97 / 4e-20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G33910 47 / 3e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006048 [exp] 1238 / 0 AT4G02510 1178 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10005063 [exp] 308 / 2e-88 AT3G16620 1204 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Lus10027835 [exp] 305 / 1e-87 AT3G16620 645 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Lus10043414 [exp] 258 / 6e-75 AT4G02510 387 / 2e-119 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10034170 [exp] 248 / 1e-69 AT2G16640 374 / 1e-111 multimeric translocon complex in the outer envelope membrane 132 (.1) Lus10006471 [exp] 223 / 3e-61 AT5G20300 754 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Lus10027712 [exp] 217 / 4e-59 AT5G20300 744 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Lus10004619 [exp] 145 / 2e-38 AT5G20300 239 / 3e-73 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Lus10010292 [exp] 124 / 4e-31 AT1G02280 390 / 1e-137 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G224900 [exp] 397 / 2e-121 AT4G02510 847 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.010G014300 [exp] 377 / 3e-113 AT4G02510 812 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.008G225000 [exp] 345 / 2e-102 AT4G02510 790 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.009G131300 [exp] 314 / 2e-91 AT3G16620 1111 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.009G131200 [exp] 306 / 1e-87 AT3G16620 1129 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.004G171600 [exp] 304 / 8e-87 AT3G16620 1128 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.006G063500 [exp] 225 / 5e-62 AT5G20300 865 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Potri.018G123300 [exp] 217 / 4e-59 AT5G20300 796 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Potri.002G183400 [exp] 121 / 4e-30 AT1G02280 417 / 6e-148 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2) Potri.014G109400 [exp] 120 / 1e-29 AT1G02280 422 / 4e-150 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF04548 [flax] [poplar] AIG1 AIG1 family
Representative CDS sequence Show only first row Show all	>Lus10028706 pacid=23164595 polypeptide=Lus10028706 locus=Lus10028706.g ID=Lus10028706.BGIv1.0 annot-version=v1.0 ATGGCGTCCACCACAGCTCCGGATTCTCCGTCTCCCAGCAACTTCTCAGCTGACGATGATGTAACTGTGGATAAATCCGGAATTGAGCTGGATAAGCCTG TTCAAAATGATGATGAGAACGACGAGAAAGCTGGAGAAAGTTTGGTGAAAGTGGCTGAGACGATGAAGGAACCGGACTCCGTTGTGGAGGCTGTTCGTGT TGAATTGGCCGAACCTGGAGTTTCCGTGGTTGGAGAAGCGGAGGAAAGTAAGGCGGAGGAGAAAGTGGAGGTGGTGGTTGATGAGAGTCTGCCGCTGGAT AATGAGTTCGATAAGATTGGTGTCGAGGCGGAAGAATCGGTTCAATCGGATAAGGATAAGGCTATCGGCGATGATGATAAGGTAAGTGTGGAATTGGACA CTGTTGTTGAAGGTGTTCATTTGAATTTGTTAGAACCAGGCGTAGTAGCAGTTTCTGAAGAAGTAGAAGGGAGTAAGGAGGAGGCTGAATTTGTGGCAAT GTTAGAGGAGAAAGTGGAGAGTTTTCCTGTGGATGATAATAAGTTCGATAATATTGCTAGTGGTAGTGAGGATTTGGTCAAATTGGATAAGGTTTCATTG CCTGAGATGGGAGATGTAGAAGAATTGGACTCGGTTGTTGATGCTGTTCGTGTTGAATTGGCGGAACCGGGATTGGCAGTTGTTGGAGAAATGGAAGGAA GTAGTAAGGAGGAGGCTGAATTTCTGGCAATGTTGGAGGAGAAAGTGGTTGAGAGTTTTCCTGTGGAAGATAATAAGTTTGAAAACATTGCTGGTGATAG TGAAGACTTGGTCAAGTTGGATGTGAATCATACTGAGGCTCGAACTGTTAATGATGCTGCAGATATCGAAATTTCGGGTCTTGGAAATGAGGGAAGTGAG GTCAATGGTAATGTGACTGAGTATGATTCTGTGCCGAAAGTTGAACCAGACGTTAGTGCAAGAGAAGTTAGTGTGGTTAAGGAAGCTGAGGAGGTTAGTG GTGAAACTGTTGTTGGTGGAGGCACAGCTGATAAGACTGTTGCTGTCGCAGTTGCTTCAAGCGATCGGTCTGTTCCGGTGGTTCCGGTGGTCAACGATTT GGAAGAAGATGATCAAGCCGCTGAAAGTAAGGAGAGTGACAAAACTATTGAGGCTTTGACTGAATCTGATGTTGGTCAAGTTGCTGAATTTGATAATGTT ACTAAAGCCGAAGCTGAAGATGAATCGGATGGAGGTGAAGAGAAGACTAGGTCTGACGAAGAATCGGAGTCGGATGAGGAGGAAACAGAAGGTAAAGTGT TTGGAAGTTCAGAAGCTGCCAAGCAATTCCTGAATGAGTTGAAGCAAGATGGTCAAATCGTAACCGATTCTGAAGAAGAAGAAGAAGAGGAAGAAGAAGA AATGGATACTGATGACGAAGAAGGAGAAGGGAAAGAGCTCTTCGATTCGGCGGCATTGGCAGCTTTGCTGAAAGCAGCCAGTGCAGGAGGAGGAACAAGT TCAGAAGGTGGTGGTGGTGATCACACCGTCACAATAACATCTCAAGACGGTTCACAGCGGCTCTTCTCTCTCGAGCGGCCTGCGGGGTTAGGATCGTCAT TGGGAGCAATGAGACCACGAACGAATATTCCAAACCGTTCGAATCTTTTTGGCCCTCCTAGGGAAGAACCAAGTGATGAGAGCTTGAGCGATGAACAGAA GAAGAAGCTGGAAGATATGCAGCAGATGATGATCAAATACTTGAGGCTTGTTTTCAGGCTGGGTTACTCGCCGGATGAGTCCATAGTTTCGCAGGTTCTC TATCGAATGGCGATGATTGCGGGGAAGAAGAGCGGCCAGATTTTCAACGTCGATTCCGCGAAGAGGATCGCTCTCCAGCTCGAAACGGAGAGGAAGGAGG ACGACGTCAGCTTCTCCTTAAACATACTTGTTCTTGGAAAGTCAGGAGTGGGGAAGAGCTCTACCGTGAATGCGATTTTCGGGGAAGAGAAGTCAGTAAT CGATGCATTCGAACCTGCCACCGGATCTGTAAAAGAAATCAATGGTGTGGTGGATGGGATCACGATCAGGATCATCGACAGCCCGGGGCTGAAATCGTCA GGTTCCGAGCAAGGCACGAATCGGAGGATACTGAATTCCATAAAGAGGTACATGAAGAGATGCCCTCCGGACATTGTACTGTATGTTGACCGGCTCGATA CCCAGACGAGGGATCTAAACGATCTCCCGTTGCTGAAGTCGATCACTAGCCATCTTGGCTCTTCGATCTGGCGAAACGCAATCGTCACTCTCACCCATGC AGCTTCAGCGCCACCTGATGGACCGTCAGGTGCACCTCTGAGTTACGATGTGTTTGTCGCTCAGCGGTCACACGTTCTCCAGCAGTCGATCGGTCAAGCT GTCGGCGATCTCCGTCTGATGAATCCGAGCCTGATGAATCCGGTATCGCTCGTCGAGAATCACTCTTCCTGTCGCAGGAATCGAGACGGTGAAAAAGTGC TTCCGAATGGTCAGAGCTGGAGGCTTCAGCTTCTGCTGTTATGTTCCTCTATGAAGATACTCTCCGAATCGACCGCTCTCTCGAAACCGGCTTCTCAGGA TGCTGCTTTCGATCCTCGAAAACTATTCGGAGGCGGCCGAGCTCGTTCGCCACCGCTTCCGTACATGCTGTCGTGGCTAACGCCCAGCTGCCCCCCCGCC CAGACCGCGGGCGGCGGGGGGACACACGAAGGCGAGCACGAAAATCGACGAAGATATTGA
AA sequence Show only first row Show all	>Lus10028706 pacid=23164595 polypeptide=Lus10028706 locus=Lus10028706.g ID=Lus10028706.BGIv1.0 annot-version=v1.0 MASTTAPDSPSPSNFSADDDVTVDKSGIELDKPVQNDDENDEKAGESLVKVAETMKEPDSVVEAVRVELAEPGVSVVGEAEESKAEEKVEVVVDESLPLD NEFDKIGVEAEESVQSDKDKAIGDDDKVSVELDTVVEGVHLNLLEPGVVAVSEEVEGSKEEAEFVAMLEEKVESFPVDDNKFDNIASGSEDLVKLDKVSL PEMGDVEELDSVVDAVRVELAEPGLAVVGEMEGSSKEEAEFLAMLEEKVVESFPVEDNKFENIAGDSEDLVKLDVNHTEARTVNDAADIEISGLGNEGSE VNGNVTEYDSVPKVEPDVSAREVSVVKEAEEVSGETVVGGGTADKTVAVAVASSDRSVPVVPVVNDLEEDDQAAESKESDKTIEALTESDVGQVAEFDNV TKAEAEDESDGGEEKTRSDEESESDEEETEGKVFGSSEAAKQFLNELKQDGQIVTDSEEEEEEEEEEMDTDDEEGEGKELFDSAALAALLKAASAGGGTS SEGGGGDHTVTITSQDGSQRLFSLERPAGLGSSLGAMRPRTNIPNRSNLFGPPREEPSDESLSDEQKKKLEDMQQMMIKYLRLVFRLGYSPDESIVSQVL YRMAMIAGKKSGQIFNVDSAKRIALQLETERKEDDVSFSLNILVLGKSGVGKSSTVNAIFGEEKSVIDAFEPATGSVKEINGVVDGITIRIIDSPGLKSS GSEQGTNRRILNSIKRYMKRCPPDIVLYVDRLDTQTRDLNDLPLLKSITSHLGSSIWRNAIVTLTHAASAPPDGPSGAPLSYDVFVAQRSHVLQQSIGQA VGDLRLMNPSLMNPVSLVENHSSCRRNRDGEKVLPNGQSWRLQLLLLCSSMKILSESTALSKPASQDAAFDPRKLFGGGRARSPPLPYMLSWLTPSCPPA QTAGGGGTHEGEHENRRRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Lus10028706 [exp]	0	1
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Lus10006048 [exp]	1.0	0.9576
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Lus10027341 [exp]	2.4	0.8800
AT4G02990		RUG2, BSM	RUGOSA 2, BELAYA SMERT, Mitoch...		Lus10022321 [exp]	4.9	0.8744
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10004978 [exp]	14.8	0.8690
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10017566 [exp]	17.3	0.7784
AT5G63290			Radical SAM superfamily protei...		Lus10001104 [exp]	17.9	0.8362
AT3G12915			Ribosomal protein S5/Elongatio...		Lus10031779 [exp]	20.2	0.8344
AT2G28000		Cpn60alpha1, SL...	SCHLEPPERLESS, chaperonin-60al...		Lus10041329 [exp]	20.4	0.8294
AT1G06190			Rho termination factor (.1.2)		Lus10024898 [exp]	22.8	0.8475
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10042924 [exp]	24.5	0.8601

Compare expression of checked genes

Lus10028706 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.