Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02510 474 / 2e-156 TOC86, TOC160, PPI2, ATTOC159, TOC159 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) AT3G16620 285 / 2e-88 ATTOC120 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) AT2G16640 282 / 7e-87 ATTOC132, TOC132 multimeric translocon complex in the outer envelope membrane 132 (.1) AT5G20300 183 / 7e-53 Toc90 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) AT4G02482 112 / 2e-30 chloroplast outer envelope GTP-binding protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006048 [exp] 588 / 0 AT4G02510 1178 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10005063 [exp] 301 / 5e-93 AT3G16620 1204 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Lus10027835 [exp] 293 / 2e-90 AT3G16620 645 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Lus10006471 [exp] 175 / 2e-49 AT5G20300 754 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Lus10027712 [exp] 169 / 3e-47 AT5G20300 744 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Lus10043414 [exp] 90 / 8e-20 AT4G02510 387 / 2e-119 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10034170 [exp] 81 / 9e-17 AT2G16640 374 / 1e-111 multimeric translocon complex in the outer envelope membrane 132 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G014300 [exp] 395 / 5e-128 AT4G02510 812 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.008G225000 [exp] 392 / 8e-128 AT4G02510 790 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.008G224900 [exp] 379 / 6e-123 AT4G02510 847 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.009G131200 [exp] 287 / 5e-88 AT3G16620 1129 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.004G171600 [exp] 284 / 5e-87 AT3G16620 1128 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.009G131300 [exp] 280 / 5e-86 AT3G16620 1111 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.006G063500 [exp] 204 / 7e-60 AT5G20300 865 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Potri.018G123300 [exp] 194 / 3e-56 AT5G20300 796 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11886 [flax] [poplar] TOC159_MAD Translocase of chloroplast 159/132, membrane anchor domain
Representative CDS sequence Show only first row Show all	>Lus10028707 pacid=23164469 polypeptide=Lus10028707 locus=Lus10028707.g ID=Lus10028707.BGIv1.0 annot-version=v1.0 ATGAAGGAAATCAAGAAGAAGGGTAAAAGCGCTGCCGTTTTAGAAGATGATTATGCTGCTGATCCTGAAACTGGCGAACCAGCAGCTGTGCAAGTTCCCT TACCGGACATGGTCCTGCCGCCTTCGTTCGACAGCGATAATCCGGTTTACAGGTATCGCTTCCTGGAACCAAATTCCCAGCTTTTGGTTCGACCAGTGCT CGACACTCACGGTTGGGACCACGATCCGGGTTACGACGGAGTCAACGTCGAGAACAGTTTAGCCATTGCTGGTAAATATCCTGCAGCGTTGACCGTCCAG GTGACTAAGGACAAGAAGGACTTCAACCTGCATTTGGATTCCTCGGTGGCCACTAAGCACGGAGGGGAGAACAACAGCGGCTCGAGCATGGCCGGGTTCG ACATCCAGAACGTTGGGAAACAGATGGCATACATCGTCCGGGGCGAGACCAAGTTCAAGAACTTCAAGAAGAACAGGACCACGGCGGGTGTCTCGGCCAC CTTCCTGGGGCCGAATGTGGCTACTGGGTTCAAGCTCGAGGACCAGATCTCGCTCGGGAAGCGTGTGGTTTTGGTGGGGAGCACCGGGACAGTCCGATCT CAGGGAGATTCGGCGTACGGGGCGAATTTGGAAGTGAGGCTCAGGGAAGCGGATTTTCCGATTGGGCAGGATCAGTCTTCGCTCGGGTTGTCTTTGGTAA ATTGGAGGGGAGATTTGGCTCTGGCGGCGAATCTTCAGTCGCAGTTCTCAGTCGGACGGAGTTCGAAGATTGCGGTTCGTGCTGGGTTGAACAATAAGCT TAGCGGACAGATCAGCGTGAGGACGAGCAGCTCGGATCAGCTTCAGATCGCCTTGGTTGGGCTTCTCCCAATCGCGGTGTCGATATACAAGAGCATTCGT CCTCCGCTGAACGACGAAAGCTATTCCTTGTATTAG
AA sequence Show only first row Show all	>Lus10028707 pacid=23164469 polypeptide=Lus10028707 locus=Lus10028707.g ID=Lus10028707.BGIv1.0 annot-version=v1.0 MKEIKKKGKSAAVLEDDYAADPETGEPAAVQVPLPDMVLPPSFDSDNPVYRYRFLEPNSQLLVRPVLDTHGWDHDPGYDGVNVENSLAIAGKYPAALTVQ VTKDKKDFNLHLDSSVATKHGGENNSGSSMAGFDIQNVGKQMAYIVRGETKFKNFKKNRTTAGVSATFLGPNVATGFKLEDQISLGKRVVLVGSTGTVRS QGDSAYGANLEVRLREADFPIGQDQSSLGLSLVNWRGDLALAANLQSQFSVGRSSKIAVRAGLNNKLSGQISVRTSSSDQLQIALVGLLPIAVSIYKSIR PPLNDESYSLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Lus10028707 [exp]	0	1
AT2G28190		CZSOD2, CSD2	copper/zinc superoxide dismuta...		Lus10016155 [exp]	2.4	0.8586
AT4G26500		SUFE1, EMB1374,...	SULFUR E 1, MBRYO DEFECTIVE 13...		Lus10015605 [exp]	3.0	0.8622
AT1G31830			Amino acid permease family pro...		Lus10012153 [exp]	13.0	0.8488
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10013653 [exp]	15.1	0.7353
AT2G42310			unknown protein		Lus10042351 [exp]	16.7	0.7959
AT5G01650			Tautomerase/MIF superfamily pr...		Lus10014233 [exp]	17.0	0.7863
AT3G59980			Nucleic acid-binding, OB-fold-...		Lus10025611 [exp]	17.9	0.7553
AT3G21220		ATMAP2K_ALPHA, ...	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10037340 [exp]	21.2	0.7757
AT1G71100		RSW10	RADIAL SWELLING 10, Ribose 5-p...		Lus10042951 [exp]	21.8	0.8045
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10031423 [exp]	27.9	0.7719

Compare expression of checked genes

Lus10028707 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.