Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34320 717 / 0 Protein of unknown function (DUF668) (.1) AT5G08660 505 / 1e-172 Protein of unknown function (DUF668) (.1) AT1G30755 341 / 3e-109 Protein of unknown function (DUF668) (.1) AT5G51670 73 / 2e-13 Protein of unknown function (DUF668) (.1) AT3G23160 64 / 1e-10 Protein of unknown function (DUF668) (.1) AT5G04550 60 / 4e-09 Protein of unknown function (DUF668) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006049 [exp] 1067 / 0 AT1G34320 919 / 0.0 Protein of unknown function (DUF668) (.1) Lus10017260 [exp] 423 / 1e-140 AT1G30755 567 / 0.0 Protein of unknown function (DUF668) (.1) Lus10017136 [exp] 412 / 1e-136 AT1G34320 570 / 0.0 Protein of unknown function (DUF668) (.1) Lus10018317 [exp] 402 / 3e-132 AT1G34320 559 / 0.0 Protein of unknown function (DUF668) (.1) Lus10017259 [exp] 345 / 1e-111 AT1G30755 484 / 3e-166 Protein of unknown function (DUF668) (.1) Lus10013554 [exp] 296 / 2e-93 AT1G30755 416 / 4e-140 Protein of unknown function (DUF668) (.1) Lus10013553 [exp] 72 / 1e-14 AT1G30755 79 / 1e-17 Protein of unknown function (DUF668) (.1) Lus10008987 [exp] 68 / 9e-12 AT5G04550 566 / 0.0 Protein of unknown function (DUF668) (.1) Lus10022201 [exp] 66 / 4e-11 AT3G23160 657 / 0.0 Protein of unknown function (DUF668) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G085900 [exp] 785 / 0 AT1G34320 908 / 0.0 Protein of unknown function (DUF668) (.1) Potri.013G115300 [exp] 783 / 0 AT1G34320 889 / 0.0 Protein of unknown function (DUF668) (.1) Potri.019G001500 [exp] 478 / 1e-161 AT1G34320 591 / 0.0 Protein of unknown function (DUF668) (.1) Potri.001G305800 [exp] 451 / 3e-151 AT1G34320 593 / 0.0 Protein of unknown function (DUF668) (.1) Potri.002G021400 [exp] 429 / 3e-143 AT1G30755 568 / 0.0 Protein of unknown function (DUF668) (.1) Potri.005G240300 [exp] 429 / 4e-143 AT1G30755 588 / 0.0 Protein of unknown function (DUF668) (.1) Potri.012G129900 [exp] 70 / 2e-12 AT5G51670 466 / 6e-162 Protein of unknown function (DUF668) (.1) Potri.010G233700 [exp] 68 / 8e-12 AT5G04550 677 / 0.0 Protein of unknown function (DUF668) (.1) Potri.008G164700 [exp] 66 / 4e-11 AT3G23160 661 / 0.0 Protein of unknown function (DUF668) (.1) Potri.006G117000 [exp] 65 / 1e-10 AT5G04550 356 / 8e-116 Protein of unknown function (DUF668) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11961 [flax] [poplar] DUF3475 Domain of unknown function (DUF3475) PF05003 [flax] [poplar] DUF668 Protein of unknown function (DUF668)
Representative CDS sequence Show only first row Show all	>Lus10028708 pacid=23164448 polypeptide=Lus10028708 locus=Lus10028708.g ID=Lus10028708.BGIv1.0 annot-version=v1.0 ATGGGGGGACTTTGTTCTAGGAGTTCAACTGTAGACAATGCTTTAGGAGGAGGTGGTGGAAGCCTCTCACATTCGAATGGTCACATGAACGAGCAGGGCG GTTCAATTTACGATCAGTCTTGTCATGTCAAAGCAAGTAGTACAACGACTATGAAGCCTCCAGCTATTGAGAGTGTTGATAATCAGCGGGAAGAGCTGGG ATCGTCTATGGAGTTGAGTGTGGCTCCTCATGGTATGAGTCAGGATGAGCTTTACGATGGTATCCCTCGTTTGCCGAGGGTTCTTTCGAACAAGTCTGGA TCGACCAAGTCCAAGCAGGCTGCCGTTTCAAAGGTTTCAGAAGTTATAGGCAGAGCCGGTACTGCTGGCCTCGGCAAGGCAGTAGAGGTATTGGACACGC TCGGTAGCAGCATGACGAATCTGAATCCTAGCAGTGGATTTACGTCAGGAGTGACGACAAAGGGGAACAAGATTGCAATTTTGTCGTTCGAAGTTGCCAA TACGATCGTTAAGGGTGCCAATCTAATGCAATCCCTTTCAAAGGAGAACATCATACATCTAAAAGAAGTCGTGCTTCCTTCTGAAGGGGTCCAAAATTTG ATATCCAGAGATATGGACGAGCTCTTGAGAATCGCAGCGTATGATAAAAGGTTAGGATCGGAGCTTATGCCCGAGAGACAACTTAGGGAAGAGGCTGAGA CAATGATGCAAAACTTAATGACAATGGTTCAGTACACAGCTGAATTGTATCACGAAATGCATGCTTTGGACAGATTCGAACAAGATTACCAACGAAAGCT TCACGAAGACGAGAACTCGAGTACTGCACAAAGAGGAGATAGCCTCACAATTTTGAGGGCGGAATTGAAGAGTCAACGGAAGAACGTGAAAAGTTTGAAG AAGAAATCCCTTTGGTCCAAGATTTTGGAAGAGGTAATGGAGAAACTCGTAGACATTGTCCATTTCTTGCATCTGGAGATTCATGAAGCCTTTGGAAATG CAGATAGCGATAGACCGGTGAAAAGTTCTACGAACAATCACAAGAAGCTCGGTTCTGCTGGCCTTGCTTTGCATTATGCAAATATCATCACTCAAATCGA TACTCTCGTGTCTCGATCAAGCTCTGTGCCTCCGAGTACGAGAGACGCGTTGTACCAAGGGCTGCCGCCTAGCATCAAGTCCACCCTCCGCTCGAAACTG GTTTTCTTGCAGGTCGATGAGGAGCTTACTGTCCCTCAGATCAAAGACGAAATGGAGAAAACCTTGCGATGGCTCGTACCAATAGCTGCTAACACAACCA AAGCGCACCACGGGTTCGGTTGGGTTGGAGAATGGGCGAACACAGGCTCCGAAATGAACTGGAAACCAGCCGGGCAGAACGACTTGCTCAGAATCGAGAC GCTGCACCACGCCGACCAAGACAAGACCGAGATGCACATCCTTCAACTCGTGGTGTGGCTCCATCATCTTCTCAACCAAGTACGAGCCGCCAACGGTGGT GGGCTCCGGTCTCCTGTAAAATCGCCGATTCGATCCCCGAAGACGATCCAGCTGGCGGCCGCGGCTCCACAGTCTCCGATGTTGACGGTCGAAGATCACG AGATGCTTAGGGACGTTATCAAGAGGAAGAAACCGCCCGGAATAAGCAAGAGCCAGGAATTCGACACGGATCGAATCAACCGGCTTAGCAAGCACCATAG GCTTAGCAAGAGCAGCAGTCACTCGCCGATCCGCGAAACGAAAAGAAACCCTTTCCCCATTAGAAGACCCTTGTCGATTCCTCTAGTCATCGACTTCGAC ATTGACCGGATCAAAGCGCTGGATGTTATGGATCGCGTCGACACAATTCGTAGCCTGTAG
AA sequence Show only first row Show all	>Lus10028708 pacid=23164448 polypeptide=Lus10028708 locus=Lus10028708.g ID=Lus10028708.BGIv1.0 annot-version=v1.0 MGGLCSRSSTVDNALGGGGGSLSHSNGHMNEQGGSIYDQSCHVKASSTTTMKPPAIESVDNQREELGSSMELSVAPHGMSQDELYDGIPRLPRVLSNKSG STKSKQAAVSKVSEVIGRAGTAGLGKAVEVLDTLGSSMTNLNPSSGFTSGVTTKGNKIAILSFEVANTIVKGANLMQSLSKENIIHLKEVVLPSEGVQNL ISRDMDELLRIAAYDKRLGSELMPERQLREEAETMMQNLMTMVQYTAELYHEMHALDRFEQDYQRKLHEDENSSTAQRGDSLTILRAELKSQRKNVKSLK KKSLWSKILEEVMEKLVDIVHFLHLEIHEAFGNADSDRPVKSSTNNHKKLGSAGLALHYANIITQIDTLVSRSSSVPPSTRDALYQGLPPSIKSTLRSKL VFLQVDEELTVPQIKDEMEKTLRWLVPIAANTTKAHHGFGWVGEWANTGSEMNWKPAGQNDLLRIETLHHADQDKTEMHILQLVVWLHHLLNQVRAANGG GLRSPVKSPIRSPKTIQLAAAAPQSPMLTVEDHEMLRDVIKRKKPPGISKSQEFDTDRINRLSKHHRLSKSSSHSPIRETKRNPFPIRRPLSIPLVIDFD IDRIKALDVMDRVDTIRSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34320			Protein of unknown function (D...		Lus10028708 [exp]	0	1
AT1G34320			Protein of unknown function (D...		Lus10006049 [exp]	1.0	0.8571
AT3G23610		DSPTP1	dual specificity protein phosp...		Lus10006229 [exp]	21.5	0.8199
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Lus10003119 [exp]	22.3	0.8336
AT1G31930		XLG3	extra-large GTP-binding protei...		Lus10012124 [exp]	36.2	0.7975
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10034454 [exp]	43.6	0.8037
AT2G23320	WRKY	WRKY15	WRKY DNA-binding protein 15 (....		Lus10006261 [exp]	45.7	0.7999
AT3G09560		ATPAH1	PHOSPHATIDIC ACID PHOSPHOHYDRO...		Lus10009064 [exp]	70.3	0.8027
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10001813 [exp]	74.5	0.7690
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Lus10010963 [exp]	77.3	0.7639
AT3G24090			glutamine-fructose-6-phosphate...		Lus10026998 [exp]	89.5	0.7847

Compare expression of checked genes

Lus10028708 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.