Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34260 1118 / 0 FAB1D FORMS APLOID AND BINUCLEATE CELLS 1A (.1) AT4G33240 440 / 1e-128 FAB1A FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) AT3G14270 429 / 1e-124 FAB1B FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT1G71010 412 / 1e-119 FAB1C FORMS APLOID AND BINUCLEATE CELLS 1C (.1) AT1G77740 82 / 1e-15 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT1G10900 81 / 4e-15 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT1G60890 81 / 5e-15 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G21980 79 / 1e-14 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT3G09920 76 / 2e-13 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) AT3G07960 75 / 3e-13 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006051 [exp] 2598 / 0 AT1G34260 1175 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1) Lus10038129 [exp] 438 / 1e-128 AT3G14270 1144 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10035998 [exp] 419 / 1e-121 AT1G71010 1660 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1) Lus10005173 [exp] 382 / 4e-109 AT4G33240 1063 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10005176 [exp] 379 / 4e-108 AT4G33240 1046 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10038127 [exp] 377 / 8e-108 AT4G33240 1429 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10016702 [exp] 350 / 2e-98 AT1G71010 1149 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1) Lus10012689 [exp] 83 / 9e-16 AT1G60890 932 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10020821 [exp] 83 / 1e-15 AT1G60890 935 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G116400 [exp] 1592 / 0 AT1G34260 1184 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1) Potri.019G087000 [exp] 1571 / 0 AT1G34260 1190 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1) Potri.001G163200 [exp] 430 / 4e-125 AT3G14270 2134 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.010G113700 [exp] 422 / 1e-122 AT1G71010 1728 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1) Potri.008G128800 [exp] 408 / 5e-118 AT1G71010 1714 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1) Potri.003G072300 [exp] 398 / 3e-114 AT3G14270 2157 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.019G015768 [exp] 79 / 1e-14 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.004G139900 [exp] 77 / 6e-14 AT1G21980 948 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.003G019100 [exp] 77 / 7e-14 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.005G172800 [exp] 75 / 3e-13 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01504 [flax] [poplar] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase CL0016 [flax] [poplar] PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10028710 pacid=23164630 polypeptide=Lus10028710 locus=Lus10028710.g ID=Lus10028710.BGIv1.0 annot-version=v1.0 ATGTTGATGGATGGTCTTGCAGAGTTTGTGAAGGAGAAGCAGGAAGAGGATTCGATAAAGCGGAGTAGATCGTGCCAACCAACGATGAGTTCAGCGCCTT CTTTCTCAATCAATGATCGATTGCTCTCCACAAGCAGTGATTTTTCTGTTGACATGAACTCGTATGACCGGTATGATCAAATGCATAACACGACTGAAGT TAACGGGGAGGGCAGCGATGGTGAGTTGGTGAAAGATGTAGAAATTACAGAAAGTTGCGTCTTGAATGAGGCAAACGGGACTGCTTCTCCGTGTTTGGTG GATGAAATCGATCCGCAAGATTGGGAGGCTCCCGAACCGGAAGATCCACAGGATGACGTGGAGGATAGTTTGGCGTTTAACGATGTCGACGATGAAGATG AATGTGGTGACGGGACAACGTGGGGGCCAACAGGATCTTTGACTCCATCTCCAGAGCCGAGCCACGAAAGTTACGGGTTCAAAGAAAAGAAACAAAGAGC TATGGAAGAAGTTATAAATGGGAAGTTTAAGGATGTAGTCAAACAGCTGGTTAAGACAGCAGCTGCCGATTCGGGTACTGAGATGGATAGTTGGGTGGAT ATCGTGACTTCCTTATCGTGGGAAGCTGCGTCATTCTTGAAACCGAATGCTGTTGAAGGGAAGGCAATGGATCCAGATGGCTATGTGAAAGTAAAGTGCA TTGCAACTGGCTACCCTAACCAAAGTGAAGTAATCAAAGGATTGGTCTTTAAGAAGCATGCGGCTCACAAGCACATGGCTACGGAGTACACGAAGCCAAG ATTGCTTCTAATCAGGGGAGTTCTCGGGCAATCTGCCGGAACTGGGCTGTCATCATTTAGGACAATGGATCAGGAAAAGGACTATTTGAAGTCTCTTATC GATGCGATCGAATCGTGCCACCCGAACATCGTCTTGGTGGAGAAATCGGTTTCTCGCGATGTCCAAGAGTCTATCCTTGCCAAAGGGATAACATTAGTTT ATGATATGAAGCTTCATCGCCTAGAAAGAGTTGCTCGCTGTACTGGCTCGCCAATTCTATCGTTAGATGCTCTGACGACTGAGAAGTTAAAGCAGTGCGA TTCGTTCCATGTCGAAACGTTTGTGGAGGAACATGCTGATGTTGGTGAAGGGGAAAAGAAACCGAGGAAGACTCTGATGTTCTTTGGTGGCTGCCCTACT CGTCTTGGCTGTACAATTTTGTTGAAAGGAAGTCACAGTGATGAACTGAAGAGGATCAAGTATGTGGTGCAGATAGCGGTTATATGTGCATATCACATGA TTCTCGAGACATCGTTTCTTGTCGATTGGAAAGCAATGTTCTCTACTATACCTTTCACCAGGGATTCGGAAGTGAACCAACAGGTCCATGATTCAAGCCC TCAGGTTCCTGTAGAGCTGATTTCCACAGACCTTAGGCCTTCTGCGATTGATATTCCGATTGCGAACACAGATGATTTCTTGGACGGTTTCCTTGGTTCG GATGTGGATCATGGAGTCACTCCAACTCCGAAATTCCCTTACGTTAAATACAAACCGGCGATATTTACCGGCTTTTCCTCTTTGTCTTCCTCGCTGAGGA GAGTGATTGGTGAAAATTTCTCAGTTCCACCTGCCGATCCGTATCAGTCACTCTTTAACTATTTAGGATTAAATGGAAAGGAAGAAGATGGTGGCCGGAT TACGGAAGAAGTTCCGATTTCGAGACCACTCAATGATACTGACCAATGTGATGGGGAAGCCAAGGGTGGTATCGACAACGAGAAATCGGATGATGGTAAA GAGAACGAGAAAGATGCGGAGAGTAATGACAGTCCAGTGTTGGATTCACAGAGTATATTGGTGTTGATGTCGCGACGAAATGCACTACGAAGGTCGATAT GTGAACACAGCCGCTTCTCTCACATCATGTTCTACAAGAATTTCGACATTCCACTCGGGAAGTTTCTTCGCGATAATCTATTCAATCAGAGGAGCCGGTG TGCTACCTGCGAAGAACTTCCGGAAATGCACTATTACTACTACGCACACCACAATAAGCAGCTTACTATAAGAGTTAAGCGGCTCGTGAAACCGTTGCCT GGGGAAGCAGAAGGAAAGATCTGGATGTGGAGTCGATGCGGTAAATGTAAGGCTGTCTCGAGATCTTCTTCGACAAAAAGAGTGTTGATTTCGACTGCTG CTCGAAGTCTATCTTTTGGAAAATTCTTGGAGCTCAGCTTTTCTCACCAGTCTTCGTTTGGTAGATCTTCTTCCAGCTGTGGCCACTCTCTGGACAAAGA TTTCCTCTACTTCTTCGGATTAGGTCCTCTTGCTGCATTGTTCAAATATTCTCAAGTGACGACCCATACAATCTCTATGCCGCCTCAGGAATTGGATTTC AGCAATTCGGTTAGGCACGAAGGTTTGAGACGAGAATTCGAAGATGTATACTCGAAAGGGATACTCCTCTTTTCTGGGCTAGCAGACGCTTTGAGAGAGC TGGAGTCTCGATTCGGAAGCAACGTTTTGAAGCTTCAAGGATCGTCGAAACGATTCTCTGACATTGAAGAGATGCTGAAGCAAGAAATGTCCGAATTTGA GGTGAATATCCATGATGCTGCTGCTGATTTGGGGAAAGCAAGTGAGACTGGTAACAATCTTCTTTCGTTGAATCGGTTGCTGTGGGAGCTTCTTCTCGAA TCGTGCGTTTGGGAACAACGTTTGCATTCTATAATTTCGACAAGTGAAGCTGAAGGGAACTTGAAAGACTCAAATGATGAATCTCCACTCAAGAACGATG TGGCCCCCTCAGTTATAGCGGACGAGGATACTGATAGAATAAAATTGGCTGTAGCTGGTTTAAGTAATCAGTCCTCGAGCAATACCTTTCTGGATCACGA GCACGGGCAATGTGTTGACGGTAGTTGTCAAGGTAACGACTTGACTTCATACGGAGTTACGCAAGTCGAGAGGGTTGTTCCTATTGCATCGGGGCACGAG GTCCACGATTCGAGCTTCGTGGTGGACGAATCCAACAGGGGGATGTTTCTGCAGTCTCTAGTGTCGAGCTTGGGGAGCTCGAGCGGGTGGTTCTGGAAGC CGTTTCCGGAAATCCGTGAGATATACATGGAGGATCTTCACCGAGGGTTCATACCGAAATTCAGGCCGGTTAATGGCTACTACATCCAGGAACACGTGGC TGCTGCGTATCAACTGATTAACGAGGAAGGTCCAAGGCTGCACATACCGCTCGGAAATGGAAACGACATTGTAAGGGACTATGACGGAGAGCTCTCAAGC ATCATCGCTTGCGCACTTGCGTGCTTGAAAGATCTACCGGTGACAGCTGAGTTTTCGAATGACTACTACAGAATGGAAGGGAAGCTGAATGATGGCTTGG CACGTTGGTCATCTGTTAGTTCGGTCGGTTCTGATTCCGAGTTAATCCAGTCGGTGGTGAGCATATCGTCTGAGGAATCGGTCTTTTCGAGCTTCAACGG ATTGAATCTTCTCGAGTTCACCGTCCCTACTGAGAATCTCCACCCTGCAGTTTCCTTAGGGGCTGCCAAAACCCTAGGGAAGGGTAGATACTCGGTTGTC TGTGTGTGTGCGAAGCAATTCCGCGATCTTAGGAATCACTGCTGCCCGTCGGAGCTTGATTTCATCGCTTCCCTCAGCCGCTGCAAGATCTGGGATGCTC AAGGTGGCAAGAGCAAGTCTTTCTTCGCTAAAACGCTCGACGACAGGTTCATCATCAAGGAGATCAAGAAGACCGAGTTCGAGTCCTTCGTCAAGTTTGC ACCGCACTATTTCAAGTACATGAACGAGTCCTACGAGCTTGGTAACCAGACGTGCCTTGCGAAAGTCCTTGGCATATATCAGGTGATTGTTCGGCCTCTG AAAGGTGGCAAAGAGACGAGGCACGATCTGATGGTGATGGAGAATCTTACATTTGGTCGCGACATCATTCGTCGCTACGACCTCAAAGGCGCTCTGCACG CGCGGTACACCACAGTCATGAACGGTTCAGGTGAAGTTCTGCTGGACCAGAACTTTGTCGATGACATGAACTCGTCTCCTCTCTACGTTAGCAATAGAGC GAAACGCCTCCTCGAACGCGCGGTTTGGAACGACACAACATTCCTCAATTCGATCAACGTGATGGACTACTCCTTATTCGTCGGGATCGACATTCAACGC CAAGAACTCGTGTGTGGCATCATCGACTACCTTAGACAGTACACATGGGACAAGCAGCTCGAAACATGGGTCAAATCCTCCCTCGTCGTCCCAAAGAACG TTCAACCGACAGTAATTTCCCCTCGGGAGTACAAGAAGAGGTTCCGAAAGTTCATTTCCACTCACTTCCTCAGTGTTCCCGACGACTGGTGCAAGCCGAA GCCTTGCGAGCCCTGTGTGCTATGCGGTCCCACCGATTCTTCCTCTCAATAG
AA sequence Show only first row Show all	>Lus10028710 pacid=23164630 polypeptide=Lus10028710 locus=Lus10028710.g ID=Lus10028710.BGIv1.0 annot-version=v1.0 MLMDGLAEFVKEKQEEDSIKRSRSCQPTMSSAPSFSINDRLLSTSSDFSVDMNSYDRYDQMHNTTEVNGEGSDGELVKDVEITESCVLNEANGTASPCLV DEIDPQDWEAPEPEDPQDDVEDSLAFNDVDDEDECGDGTTWGPTGSLTPSPEPSHESYGFKEKKQRAMEEVINGKFKDVVKQLVKTAAADSGTEMDSWVD IVTSLSWEAASFLKPNAVEGKAMDPDGYVKVKCIATGYPNQSEVIKGLVFKKHAAHKHMATEYTKPRLLLIRGVLGQSAGTGLSSFRTMDQEKDYLKSLI DAIESCHPNIVLVEKSVSRDVQESILAKGITLVYDMKLHRLERVARCTGSPILSLDALTTEKLKQCDSFHVETFVEEHADVGEGEKKPRKTLMFFGGCPT RLGCTILLKGSHSDELKRIKYVVQIAVICAYHMILETSFLVDWKAMFSTIPFTRDSEVNQQVHDSSPQVPVELISTDLRPSAIDIPIANTDDFLDGFLGS DVDHGVTPTPKFPYVKYKPAIFTGFSSLSSSLRRVIGENFSVPPADPYQSLFNYLGLNGKEEDGGRITEEVPISRPLNDTDQCDGEAKGGIDNEKSDDGK ENEKDAESNDSPVLDSQSILVLMSRRNALRRSICEHSRFSHIMFYKNFDIPLGKFLRDNLFNQRSRCATCEELPEMHYYYYAHHNKQLTIRVKRLVKPLP GEAEGKIWMWSRCGKCKAVSRSSSTKRVLISTAARSLSFGKFLELSFSHQSSFGRSSSSCGHSLDKDFLYFFGLGPLAALFKYSQVTTHTISMPPQELDF SNSVRHEGLRREFEDVYSKGILLFSGLADALRELESRFGSNVLKLQGSSKRFSDIEEMLKQEMSEFEVNIHDAAADLGKASETGNNLLSLNRLLWELLLE SCVWEQRLHSIISTSEAEGNLKDSNDESPLKNDVAPSVIADEDTDRIKLAVAGLSNQSSSNTFLDHEHGQCVDGSCQGNDLTSYGVTQVERVVPIASGHE VHDSSFVVDESNRGMFLQSLVSSLGSSSGWFWKPFPEIREIYMEDLHRGFIPKFRPVNGYYIQEHVAAAYQLINEEGPRLHIPLGNGNDIVRDYDGELSS IIACALACLKDLPVTAEFSNDYYRMEGKLNDGLARWSSVSSVGSDSELIQSVVSISSEESVFSSFNGLNLLEFTVPTENLHPAVSLGAAKTLGKGRYSVV CVCAKQFRDLRNHCCPSELDFIASLSRCKIWDAQGGKSKSFFAKTLDDRFIIKEIKKTEFESFVKFAPHYFKYMNESYELGNQTCLAKVLGIYQVIVRPL KGGKETRHDLMVMENLTFGRDIIRRYDLKGALHARYTTVMNGSGEVLLDQNFVDDMNSSPLYVSNRAKRLLERAVWNDTTFLNSINVMDYSLFVGIDIQR QELVCGIIDYLRQYTWDKQLETWVKSSLVVPKNVQPTVISPREYKKRFRKFISTHFLSVPDDWCKPKPCEPCVLCGPTDSSSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34260		FAB1D	FORMS APLOID AND BINUCLEATE CE...		Lus10028710 [exp]	0	1
AT1G34260		FAB1D	FORMS APLOID AND BINUCLEATE CE...		Lus10006051 [exp]	1.0	0.8862
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10025527 [exp]	4.5	0.8565
AT5G54830			DOMON domain-containing protei...		Lus10041448 [exp]	4.6	0.8561
AT5G45160			Root hair defective 3 GTP-bind...		Lus10040630 [exp]	10.2	0.8151
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Lus10038484 [exp]	10.6	0.8319
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10035104 [exp]	11.0	0.8271
AT2G20370		AtMUR3, MUR3, K...	MURUS 3, KATAMARI 1, Exostosin...		Lus10024961 [exp]	11.4	0.8277
AT3G58050			unknown protein		Lus10029299 [exp]	13.4	0.8292
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10039053 [exp]	13.9	0.8439
AT1G15130			Endosomal targeting BRO1-like ...		Lus10034634 [exp]	18.0	0.8206

Compare expression of checked genes

Lus10028710 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.