Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34300 668 / 0 lectin protein kinase family protein (.1) AT2G19130 335 / 5e-105 S-locus lectin protein kinase family protein (.1) AT5G24080 318 / 9e-103 Protein kinase superfamily protein (.1) AT4G32300 306 / 4e-94 SD2-5 S-domain-2 5 (.1) AT4G00340 293 / 3e-89 RLK4 receptor-like protein kinase 4 (.1) AT5G20050 248 / 4e-76 Protein kinase superfamily protein (.1) AT5G60900 251 / 5e-74 RLK1 receptor-like protein kinase 1 (.1) AT5G35370 239 / 7e-69 S-locus lectin protein kinase family protein (.1) AT1G60800 213 / 4e-61 NIK3 NSP-interacting kinase 3 (.1) AT1G66920 212 / 7e-61 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006052 [exp] 1006 / 0 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10002917 [exp] 323 / 2e-100 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10000249 [exp] 318 / 1e-98 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10039315 [exp] 318 / 3e-98 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10042266 [exp] 312 / 8e-97 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033748 [exp] 306 / 2e-94 AT2G19130 711 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013252 [exp] 306 / 3e-94 AT1G34300 378 / 7e-119 lectin protein kinase family protein (.1) Lus10029802 [exp] 305 / 5e-94 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033032 [exp] 281 / 1e-88 AT5G20050 483 / 4e-169 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G115700 [exp] 748 / 0 AT1G34300 939 / 0.0 lectin protein kinase family protein (.1) Potri.019G086200 [exp] 745 / 0 AT1G34300 918 / 0.0 lectin protein kinase family protein (.1) Potri.019G086400 [exp] 723 / 0 AT1G34300 904 / 0.0 lectin protein kinase family protein (.1) Potri.013G115800 [exp] 696 / 0 AT1G34300 858 / 0.0 lectin protein kinase family protein (.1) Potri.019G086300 [exp] 680 / 0 AT1G34300 847 / 0.0 lectin protein kinase family protein (.1) Potri.018G027300 [exp] 326 / 8e-102 AT4G32300 1012 / 0.0 S-domain-2 5 (.1) Potri.019G119200 [exp] 325 / 2e-101 AT2G19130 874 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.015G026300 [exp] 321 / 1e-99 AT5G24080 684 / 0.0 Protein kinase superfamily protein (.1) Potri.006G254600 [exp] 320 / 3e-99 AT4G32300 965 / 0.0 S-domain-2 5 (.1) Potri.010G103300 [exp] 311 / 3e-96 AT1G34300 375 / 1e-117 lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10028711 pacid=23164535 polypeptide=Lus10028711 locus=Lus10028711.g ID=Lus10028711.BGIv1.0 annot-version=v1.0 ATGTCAAGTGTATGGTTACTGTGGCAACATGGGGATAGCTATAACGTTTCGAGCTCGAACCCTATCTGTGGATGTCCGTCTCAGAATTTCGAGCCGGTCG ATCCTAACGGTCGTAGAAAGGGTTGTAGAAGGAAAGTAGAGATACAGGATTGTCCAGGTTCCGCTACAATGTTGGAGCTAACTCATGCTAGGTTCTTGAC TTACCCACCCGAGTTATCGTCTCAGGTTTTCTGGGTCGCGATCACTGGCTGTAGGTTGAACTGTCTCCAGAGCCGTTCGTGTCTCGCTTCGACTAGTTTA GGAGACGGGACTGGGTTGTGTTATTTGAAGACGTCTGAGTTCGTTAGTGGCTATCAGAATCCAGCACTCCCCAGTACTTCATATGTGAAGGTGTGTGGGC CCGAGCAGCCGAATCTGACAGTTGAAACGGTGGCTGTTGGAGGAATGGAGGGTAAAGGATTGAAGCTTAAAGCTTGGAAAGTTGCTCTAATGGTTATTGC TGCAATTTCTGGCTTGGTTGCTGCAGAGGCTGGTTTATGGTTTTGGTGCTGTAAGAACGGTTCGAAATTGGGTACCTTATCGGCTCAGTACGCGCTTCTC GAGTACTCTTCTGGTGCGCCTGTGCAGTTCTCGTACATGGAGCTTCACCGTTCGACGAATGGCTTCAAGGAGAAGCTGGGAGAAGGCGGATTCGGAGCTG TTTATAGAGGTGTACTTGTTAACAAGACTGTTGTTGCGGTGAAGCAGCTCGAAGGGATCGAGCAAGGCGAGAAGCAGTTTCGAATGGAGGTTGCTACCAT AAGCAGCACACATCATTTGAATTTAGTAAGGCTGATCGGGTTTTGCTCCGAAGGACGACTTCGGTTGTTGGTTTACGAGTACATGCGGAACAGTTCTCTC GACGGATTCCTTTTCCCGGAAGATAATCAGTCCGGCAAGTTCCTGAGCTGGGAGAGTAGGTTCAGGATTGCGGTGGGGACTGCGAGAGGGATCACGTACC TCCACGAGGAATGTCGGGATTGCATCGTGCATTGCGACATCAAGCCGGAGAACATCCTCCTGGACGAGAACTACAACGCGAAAGTATCAGATTTCGGACT TGCGAAGCTGATAAGCCCCAAGGATCACAGGTACAGAACTTTAAAAAGCGTCCGGGGGACGAGAGGGTATCTAGCTCCGGAGTGGTTAGCAAATCTTCCG ATAACTTCGAAATCGGACGTGTTCAGCTACGGGATGGTGCTGCTCGAGTTAGTCAGCGGGAGGAGAAACTTTGAGGTGTCGGAGGATACCAACATGAGGA AGTTCACTGCCTGGGCTTACGACGAGTTCGAGAAGGATAATGTGGAAGCCATCATCGACAAGCGACTTTATTCATCCGGAGGCTTTCACGATCAAATGAT GGATATGGAGCAAGTGAAGAGGGCAATCCAGGTAAGCTTCTGGTGCATCCAGGAACAGCCATCTCAGAGGCCGATGATGGGGAGAGTGGTGCAGATGCTC GAAGGGATTGCCGAGTTTGAGAAGCCACCGGTGCCTAAGGTACTTACAGAAGGCTCATCCATGAGCGGGACGAGCATCAATGTGAGTAGCAATGTCTCTG CATATGCTCCTTCTGGTCCTGCTCCATCTTCGTCCTCGTCGAACCCGGCCACTACTGGAGGAGGTTCGTCTCGAAGTTTGTCGAAGAATACGGAGAAGCA GTCTTCGTCGCTGCTGAATTCGGAAGCTCCCCCCTCAGAACCATAG
AA sequence Show only first row Show all	>Lus10028711 pacid=23164535 polypeptide=Lus10028711 locus=Lus10028711.g ID=Lus10028711.BGIv1.0 annot-version=v1.0 MSSVWLLWQHGDSYNVSSSNPICGCPSQNFEPVDPNGRRKGCRRKVEIQDCPGSATMLELTHARFLTYPPELSSQVFWVAITGCRLNCLQSRSCLASTSL GDGTGLCYLKTSEFVSGYQNPALPSTSYVKVCGPEQPNLTVETVAVGGMEGKGLKLKAWKVALMVIAAISGLVAAEAGLWFWCCKNGSKLGTLSAQYALL EYSSGAPVQFSYMELHRSTNGFKEKLGEGGFGAVYRGVLVNKTVVAVKQLEGIEQGEKQFRMEVATISSTHHLNLVRLIGFCSEGRLRLLVYEYMRNSSL DGFLFPEDNQSGKFLSWESRFRIAVGTARGITYLHEECRDCIVHCDIKPENILLDENYNAKVSDFGLAKLISPKDHRYRTLKSVRGTRGYLAPEWLANLP ITSKSDVFSYGMVLLELVSGRRNFEVSEDTNMRKFTAWAYDEFEKDNVEAIIDKRLYSSGGFHDQMMDMEQVKRAIQVSFWCIQEQPSQRPMMGRVVQML EGIAEFEKPPVPKVLTEGSSMSGTSINVSSNVSAYAPSGPAPSSSSSNPATTGGGSSRSLSKNTEKQSSSLLNSEAPPSEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34300			lectin protein kinase family p...		Lus10028711 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10020016 [exp]	2.4	0.8707
AT2G23450			Protein kinase superfamily pro...		Lus10019657 [exp]	4.9	0.8575
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Lus10035059 [exp]	5.5	0.8317
AT3G15780			unknown protein		Lus10023132 [exp]	22.2	0.8436
AT4G12010			Disease resistance protein (TI...		Lus10012246 [exp]	28.0	0.8345
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10028715 [exp]	31.6	0.8361
AT3G14470			NB-ARC domain-containing disea...		Lus10026109 [exp]	37.3	0.7862
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10014922 [exp]	41.1	0.8418
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10003196 [exp]	55.6	0.7727
AT1G27000			Protein of unknown function (D...		Lus10036718 [exp]	57.9	0.8273

Compare expression of checked genes

Lus10028711 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.