Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71860 431 / 4e-152 ATPTP1, PTP1 protein tyrosine phosphatase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006053 [exp] 603 / 0 AT1G71860 429 / 3e-151 protein tyrosine phosphatase 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G115400 [exp] 479 / 3e-171 AT1G71860 490 / 2e-175 protein tyrosine phosphatase 1 (.1.2.3) Potri.019G086001 [exp] 212 / 8e-69 AT1G71860 202 / 6e-66 protein tyrosine phosphatase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00102 [flax] [poplar] Y_phosphatase Protein-tyrosine phosphatase
Representative CDS sequence Show only first row Show all	>Lus10028712 pacid=23164585 polypeptide=Lus10028712 locus=Lus10028712.g ID=Lus10028712.BGIv1.0 annot-version=v1.0 ATGACTTCTCCTTCTCCAGCCTCCGTCCCTACCCCCGCTCACCAGCAGTTCCATTTCTCTCCGGATCTTCCCTCTCTTCCTACTCTCACTCCCGAGCAAC ACGGCTACTGCTCCGATGCGCTCCGGATCCTCAAGCAGAAGCTCCGAGCTCCACAGACGATCGCTCAGGAGTTCTCTTACCTGCAGGCGAATAGGATGAC TGCATCACAAATGGCCAGAAGCTGTAAGGTGGCACTTAATAATGTCAACTCGGAGAAGAATCGTTACATTGATGTCATACCTTTTGACGGAAACAGGATT GTTCTTGATGCCTGCAAGGACTATAGATCAGAAGCAAAGGGATACATCAATGCAAGCTTCATTGAGGCTGCTCCGTCTGATAAAGTTTCGAGATTTATAG CCACCCAGGGACCGTTATCGCACACTTTCGAGGACTTCTGGGCAATGGTGATTCAGCATAAATGCCCTGCCATCGTGATGCTGACTCGTTTGGTCGATAA TTACAAGACTGTGAAATGCGGTGACTACTTTCAATCAGAAGACGGTCCGAGAGATATCGGGAATATATGCATTGTGACGAAATGGACTTCGACTGCTGAA ACCTCGCTAGTGTTGCGCAACTTAGAAGCTTGTGATAAAGTGTCAGAAGAAACACCGGTGTCGGTTTTGCACGTTCAGTATCCCGAATGGCCCGACCATG GAGTTCCCAACGACACAACGGCTGTCCGCGAAATTTTCAGAAGATTACACCATTTGCCTCCTCATCTCGGCCCGATAGTCGTCCACTGCAGTGCAGGCAT TGGGAGAACAGGAACATACTGCACAATCCACAACACGATCCAGCGAATCCTTGTCGGGGACAAATCCGCCACTGATGTCACTAAAACCGTATCGGTGTTT AGGTCTCAACGAATCGGGATGGTTCAAACCATGGAGCAATATGTATTCTGCTACGAAGCCATTGTTGACGAACTGGAAAGCCTCATCTCTGCGCCACCTC GTAACGAATGA
AA sequence Show only first row Show all	>Lus10028712 pacid=23164585 polypeptide=Lus10028712 locus=Lus10028712.g ID=Lus10028712.BGIv1.0 annot-version=v1.0 MTSPSPASVPTPAHQQFHFSPDLPSLPTLTPEQHGYCSDALRILKQKLRAPQTIAQEFSYLQANRMTASQMARSCKVALNNVNSEKNRYIDVIPFDGNRI VLDACKDYRSEAKGYINASFIEAAPSDKVSRFIATQGPLSHTFEDFWAMVIQHKCPAIVMLTRLVDNYKTVKCGDYFQSEDGPRDIGNICIVTKWTSTAE TSLVLRNLEACDKVSEETPVSVLHVQYPEWPDHGVPNDTTAVREIFRRLHHLPPHLGPIVVHCSAGIGRTGTYCTIHNTIQRILVGDKSATDVTKTVSVF RSQRIGMVQTMEQYVFCYEAIVDELESLISAPPRNE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71860		ATPTP1, PTP1	protein tyrosine phosphatase 1...		Lus10028712 [exp]	0	1
AT1G28120			unknown protein		Lus10026630 [exp]	1.0	0.9613
AT1G71860		ATPTP1, PTP1	protein tyrosine phosphatase 1...		Lus10006053 [exp]	2.0	0.9422
AT2G16250			Leucine-rich repeat protein ki...		Lus10040455 [exp]	2.4	0.9380
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10040095 [exp]	3.3	0.9243
AT5G27430			Signal peptidase subunit (.1)		Lus10004463 [exp]	3.7	0.9320
AT3G61790			Protein with RING/U-box and TR...		Lus10004001 [exp]	3.9	0.9355
AT1G78310			VQ motif-containing protein (....		Lus10036480 [exp]	4.2	0.9348
AT3G04500			RNA-binding (RRM/RBD/RNP motif...		Lus10014659 [exp]	12.6	0.9250
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10038538 [exp]	13.4	0.9361
					Lus10041954 [exp]	14.3	0.9121

Compare expression of checked genes

Lus10028712 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.